Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02827 ATGAGTAGGCGCTCGAGCAGAACTGTCTACGTAGGGAATCTCCCTGGTGACATCCGTGAAAGAGAAGTTGAAGATTTGTTTCTGAAGTATGGACACATTACACACATTGACCTAAAGGTTCCCCCAAGACCCCCAGGTTATGCGTTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGTCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGATATAGTAGTCACAACAATGGCCGGGCTGGACGAGGTGTATCTAGGCGCTCTGAATATCGTGTTCTAGTCACTGGATTGCCCTCTTCAGCATCCTGGCAGGATCTTAAGGATCACATGCGTAAGGCAGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGAGGTACTACTGGCATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAATTCCGGAATGCATTTTCCAAGGGTTATGTTCGTGTGAGGGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGTGGCCCATCCCATTCTAGAGGAAGAAGCTATAGCCGCAGTCGTAGCCGTAGCCGTAGTTACAGTCGGGGTCGGAGCCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAAatctaaatctccatcaagatctccctctcgatctcgctcaagatcAAAGTCCCGTTCATTATCAGGATATGGAAACTTGCAGCATACTGGAAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCATTTTGTTGTGGAGGTATGA 879 0.4403 MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHNNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRGRSQSKSPKGKSSQRSPAKSKSPSRSPSRSRSRSKSRSLSGYGNLQHTGNWKLGTWWDLVQLPATHFVVEV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02827 292 SMART rrm1_1 112 185 IPR000504 GO:0003723
Cca03g02827 292 SMART rrm1_1 8 78 IPR000504 GO:0003723
Cca03g02827 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Cca03g02827 292 MobiDBLite consensus disorder prediction 206 220 - -
Cca03g02827 292 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
Cca03g02827 292 Gene3D - 2 109 IPR012677 -
Cca03g02827 292 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 253 - -
Cca03g02827 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Cca03g02827 292 MobiDBLite consensus disorder prediction 221 246 - -
Cca03g02827 292 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 253 - -
Cca03g02827 292 CDD RRM2_SF2_plant_like 111 186 - -
Cca03g02827 292 MobiDBLite consensus disorder prediction 186 265 - -
Cca03g02827 292 Gene3D - 110 188 IPR012677 -
Cca03g02827 292 CDD RRM1_SF2_plant_like 8 78 - -
Cca03g02827 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Cca03g02827 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Cca03g02827 292 MobiDBLite consensus disorder prediction 73 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02827 Cca-Chr3 49627130 49632859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02827 8 195 Eukaryotic Initiation Factors Gene Family AT4G34110 24.365 4.11e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02827 K12890 - gmx:100789847 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02827 03 49627130 49632859 Cca03g02827 03 49627130 49632859 ECH