Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02826 ATGGTTATTATAGCACGCCTTATGTTTCTGTTTGCATTGTTCCAAATGGTATTTGCAAAAGGGCACGATAATGTAAGAGAGGCATGCAGCGTGACAAGGTACCAAAAGCTTTGTGTTCACTCGCTAGCACATTTCTCCAACACTGCTGGAAGAAGCCCCAGCAAGTGGGCACGTGCGGGAGTGTCCGTGTCAATAGGCGAGGTCAAGAAAGTTAAAGCATATCTAGCAGAATTGAAGAGGCAAGGGCACATGAAAGGAAGAAACAGGGTTGCACTTTCAGATTGTGTTGAAACCTTTGGCTATGCCCTTGACGAGCTTCACCAATCCCTTGGTGTGCTTAGAAGCCTGAGCAGAAGCACGTTTAGTACCCAAATGGGGGACCTCAACACATGGATCAGTGCTGCACTCACTGATGAAGATACTTGCCTCGACGGCTTTCAAGGCAAAAATCATGAGAAGCAAATTAAAGTGCTACTCAACCGGCATCAACAATCCATAGAAGTTCAGAAATGGgtaggagtgttcggccaccaccctatcggccgccgaatggcatga 558 0.4229 MVIIARLMFLFALFQMVFAKGHDNVREACSVTRYQKLCVHSLAHFSNTAGRSPSKWARAGVSVSIGEVKKVKAYLAELKRQGHMKGRNRVALSDCVETFGYALDELHQSLGVLRSLSRSTFSTQMGDLNTWISAALTDEDTCLDGFQGKNHEKQIKVLLNRHQQSIEVQKWVGVFGHHPIGRRMA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02826 185 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 169 IPR035513 -
Cca03g02826 185 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 161 - -
Cca03g02826 185 CDD PMEI-like_3 28 150 - -
Cca03g02826 185 Pfam Plant invertase/pectin methylesterase inhibitor 24 154 IPR006501 GO:0004857
Cca03g02826 185 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 23 158 IPR035513 -
Cca03g02826 185 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 11 161 - -
Cca03g02826 185 SMART PMEI_2 20 166 IPR006501 GO:0004857
Cca03g02826 185 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 156 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02826 Cca-Chr3 49609720 49611958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02826 22 167 Carbohydrate Esterase AT3G14310 34.228 2.63e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02826 - - gmx:100791264 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02826 03 49609720 49611958 Cca03g02826 03 49609720 49611958 ECH