Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02820 ATGGGTATCGATTTGAAGGCAGGAGGTAAGTCCAAGAAGACCAAGCGCACCGCTCCCAAATCCGATGACATCTACCTCAAACTCGCCGTCAAGCTGTACCGTTTTCTTGTTCGGAGGACTTCGAGTAATTTCAACGCCGTCATCCTCAAGCGCCTTTTCATGAGCAAGGTCAACAAGCCTCCGCTATCGCTCTCTAGGTTGATCCGTTACATGAAGGGGAAGGAGGACAAGATTGCTGTGGTTGTTGGGGCTGTGACCGATGACATTCGTGCGTACGAGGTTCCTGCGCTGAAGGTAACTGCCCTGAGGTTCACTAAAACTGCCAGAGCTAGAATTCTGAAGGCTGGTGGGGAATGTATCTCCTTTGAGGAACTGGCTCTTAGAGCTCCACTTGGCCAGAACACGGTTCTTCTTAGAGGTCCTAAGAATGCCCGTGAGGCTGTCAAGCACTTCGGACCAGCTCCTGGTGTGCCCCATAGTCACACCAAGCCCTATGTCCGTGCAAAGGGAAGGAAATTTGAACGGGCCAGAGGAAGAAGGAATAGCAGAGGCTTTAGAGTTTGA 564 0.5142 MGIDLKAGGKSKKTKRTAPKSDDIYLKLAVKLYRFLVRRTSSNFNAVILKRLFMSKVNKPPLSLSRLIRYMKGKEDKIAVVVGAVTDDIRAYEVPALKVTALRFTKTARARILKAGGECISFEELALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02820 187 Gene3D - 1 187 - -
Cca03g02820 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Cca03g02820 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 186 - -
Cca03g02820 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Cca03g02820 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02820 Cca-Chr3 49549264 49551758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02820 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 77.419 7.38e-102 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02820 K02883 - gmx:100306301 325.865