Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02818 ATGACAATGGACCCAGACATTGAATCCAAATATGCCCACAACGGAAAAGTGATGGTAGGCACCGCCATTCTCCTCTTCATCCTTATCCTCATCGTTATTATCTTCCACACCTACGTccgcttctgccgccgccgccgccgcctcctcctctcccactccctccccacctccgccCTGGCCTCCGGAGAGCCGCGCCTGGACCCCGCCGTGCTGAAGGCCCTTCCCACGTTCACCTTCTCCGCCGCCCACCGCCCTCTGGAGGACTGCGCCGTGTGCCTGTCGGAATTCTCCGACGGCGACGAGGGGCGCGTGCTCCCCAACTGCAGCCACGCCTTCCACGCCCATTGCATCGACGCCTGGTTCGCCTCTCACTCCACGTGTCCCCTCTGCCGAACCACGGTCCAGCCGGAAGCGAGTGGCGAAACGGCTGAAGCGGGCGAGGGTTGCTCGTCGTCGGTTGCGTGCCCGAGAAAGGCCTTGGAGTTGGGTATAATCGTGGAGGTGGCGGAGGTGGAAAGAGGGTCGGATCCGGTAACCGGAGATCAAGGGTTGAGATGGACATTGAAGCGATTGAGTTAA 579 0.5423 MTMDPDIESKYAHNGKVMVGTAILLFILILIVIIFHTYVRFCRRRRRLLLSHSLPTSALASGEPRLDPAVLKALPTFTFSAAHRPLEDCAVCLSEFSDGDEGRVLPNCSHAFHAHCIDAWFASHSTCPLCRTTVQPEASGETAEAGEGCSSSVACPRKALELGIIVEVAEVERGSDPVTGDQGLRWTLKRLS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02818 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 137 IPR013083 -
Cca03g02818 192 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Cca03g02818 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 148 - -
Cca03g02818 192 SUPERFAMILY RING/U-box 72 137 - -
Cca03g02818 192 CDD RING-H2_PA-TM-RING 88 131 - -
Cca03g02818 192 Pfam Ring finger domain 88 131 IPR001841 -
Cca03g02818 192 SMART ring_2 89 130 IPR001841 -
Cca03g02818 192 PANTHER RING-H2 FINGER PROTEIN ATL64 8 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02818 Cca-Chr3 49536026 49537065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02818 11 146 Rapid Response to Elicitors AT3G16720 41.176 2.56e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02818 - - gmx:102665377 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02818 03 49536026 49537065 Cca03g02818 03 49536026 49537065 ECH