Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02817 ATGATTGTCAAGCGGAGTATGAAAACCGGAATAAAGCACAAACGGTGTAAGCCAAAAGACCGCGAGAACCCCGCGATTCAAATTCCGAAGAAGCGGAAAGTGAATGAGCTTTATTCTGCTGAAGGGGTGTCTGAATCCAGTGCGGTCGAGTCTAATTCAAATTCCGTAGACTTGAATGGCACAATTAAATTTCAAACCGCGCAATCGGAAGAAGTTCAGCTTCAAGTTCAACCCCGGTCTTCCAGTGGTCGCGCTCAGAAACTTCCTCGCAAGTTCAACGATTCAATTCTCTACAATCACTTCGGGTTTCAAGATGAGAACGCTTTACAAGATGTTGACAAGAGAAGTAAAAGAGATTCTATTCGTTTTTCACATTCTGCTGAGTTTGACCGTTTTGAGTATTCCGTTAAGACCGTTAAAACGATGGTTAATGGAAGTCGTTCATTATTGGTTAAAGAAAAGAGTAACGCTCCTGGACTTAGTTCCAATATTGAGGGTGTGGATGGAATTGATAAAAGGAAGAAGGACATTTACAGATTAGAAGAATTTTCTCTGGATGATATAGTTTGGGCAAAATGTGGGAAGAGCTACCCTGCTTGGCCTGCCCTAGTGATTGATCCATTCTTGAAAGCTCCCAAATCCGTCTTGAGCCTTTGTGTTCCTGGTGCACTCTGTGTTATGTTTTTTGGTTATTCTAAAAATGGAAAACAAAGGGACTATGCGTGGGTGAAGCAAGGGATGATATTCCCTTTCTTGGAATTCATGGACAGATTCCAGAGGCAGATCCGATTGTACAAAAGTAAAGCAAATGATTTTCAAAAGGCATTAGAGGAGGCAATGTTGGCAGAAGAAGGCATTTTGGACTCACACTTGGGAGCTGAGCAAATTATGGAGGGTGCAGATTCCTGTGTTGGCCATGATTACCAGGAACATTCCTATCAAGACCAGGATACAATATCTTGTGCTGGCTGTGGTTTGATGTTGCCATGCAAAACCATGAAGAAGAATAAGGACTCGAGTGCTCCTCAGCACTATTGTAAGCCCTGTGCAAAGTTGCTAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTGATGTTTGGGTGCATGCTGAGTGTGACAAGATTTCCAGCAAACTTTTCAAGGATCTGGAAAATATGGATTACTATTGCCCAGATTGCAAGGGAAAATTCAATTGTAAATTATCAACATCACAAAGATACAAGTCAAAAATTATATCAACGGAGAATAGCCAAAAACCTGTATTACCTGAAAATCTAGCGGTGGTATGCAATGGCATGGAAGGAATCTATTTTCCAAAACTTCATATGATTAAGTGCAAGTGTGGCTTGTGTGGTTCAAGGAAGCAGGCACTTACTGAATGGGAAAGACATGCAGGTTGCAAAGCCAGAAAATGGAAATATAGTGTGAAAGTAGAAGGCACAATGCAACCACTAATAAAATGGATCATTGAACACAATCCCCAAGCTGGAATCCCGCAGCAGTTAGATCAGCAACAAATACTCAACCTTTTGCAAGagaagtacgaaccagttcatgcaaagtggacaacagaaagatgtgccatttgcagatgggttgaagattgggaagataacaaaattattatctgtaacagGTGCCAAATTGCTGTCCACCAAGAATGCTACGGGGCAAAGAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTCTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGGGCTCTGAAGCCAACTGATGTCGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAATTCTCTTCCAAAATCACGAGGCAATGGAACCGGCCTCTGGAATCCTTAAGATTCCTCCAAATTCCTTCAAGAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTACAAGTTGTTGCAAATGTGCTACATATTTTCATGTGATGTGCGCGTCAAGAATGGGATATGGCATGGAATTGCATTCGACAGAAAAGAATGGGACTCAAATAACGAAGACGCTAATATATTGTGCAATTCACAGGGTCCCAAACCCGGATTCAGTACTGGTTGTACATACACCCACGGGCGTATTCTCACCGAGAACTTCGCTTCAAAATCACCCGGGGTGCTTCAGGGGATCAAGGCTGGTTTCATCAAACGATGTAGAACTCCTTGAACCTTCAACCTCTGATAGTCACGAGGTTGACCCACTGTCTTCTGCCAGGTGTCGTGTGTACAAAAGGTCTTCCAATAAGAAGGATCATGCGCCAATACTGCACTTGCTTGGGGGGCCAATCCTTCATTCTTTAAGCGCAATATCTCAATTGAACAGCAATAAGGATGCTCAAGTGTTTTCTTCTCTTAAGGAACGTCTTCACCATTTACGGAAAACAGAAATTCAAAGAATTTGCCTAGGAAAATCAGGTATTCAAGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTACGGCGTAGTATTGCTGACCTAAGGGAGGCAAAGTATCGTTCAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAGGAAGTTGTAGTTGACGCAACGGATAAGGGCAATATTGCACGTTTAATAAACCACTCTTGCATGCCAAACTGCTTTGCAAGGATTATATGTTTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTCAAGGTTCCCTGTCTCTGGGTTGATTTGCGACCACAGTTTTTAGCGGAGGCTAGTCATCCACCATCGGAGCCACAACAACTACATGTTCGTCGAAATCCTCAAAGGGCGGCAAGAGAGAGACGACGACGATGCATTCTCACTCCTGGTACTGTTAGAGGTGTAGGTCatcatgatgaggaagatgaggaggatgaggaggatgaggatTAG 3075 0.4124 MIVKRSMKTGIKHKRCKPKDRENPAIQIPKKRKVNELYSAEGVSESSAVESNSNSVDLNGTIKFQTAQSEEVQLQVQPRSSSGRAQKLPRKFNDSILYNHFGFQDENALQDVDKRSKRDSIRFSHSAEFDRFEYSVKTVKTMVNGSRSLLVKEKSNAPGLSSNIEGVDGIDKRKKDIYRLEEFSLDDIVWAKCGKSYPAWPALVIDPFLKAPKSVLSLCVPGALCVMFFGYSKNGKQRDYAWVKQGMIFPFLEFMDRFQRQIRLYKSKANDFQKALEEAMLAEEGILDSHLGAEQIMEGADSCVGHDYQEHSYQDQDTISCAGCGLMLPCKTMKKNKDSSAPQHYCKPCAKLLKSKQYCGICKKIWHHSDGGNWVCCDGCDVWVHAECDKISSKLFKDLENMDYYCPDCKGKFNCKLSTSQRYKSKIISTENSQKPVLPENLAVVCNGMEGIYFPKLHMIKCKCGLCGSRKQALTEWERHAGCKARKWKYSVKVEGTMQPLIKWIIEHNPQAGIPQQLDQQQILNLLQEKYEPVHAKWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEILFQNHEAMEPASGILKIPPNSFKKTCVICKQSHGSCTSCCKCATYFHVMCASRMGYGMELHSTEKNGTQITKTLIYCAIHRVPNPDSVLVVHTPTGVFSPRTSLQNHPGCFRGSRLVSSNDVELLEPSTSDSHEVDPLSSARCRVYKRSSNKKDHAPILHLLGGPILHSLSAISQLNSNKDAQVFSSLKERLHHLRKTEIQRICLGKSGIQGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCFARIICLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLWVDLRPQFLAEASHPPSEPQQLHVRRNPQRAARERRRRCILTPGTVRGVGHHDEEDEEDEEDED 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02817 1024 ProSiteProfiles SET domain profile. 829 946 IPR001214 GO:0005515
Cca03g02817 1024 SMART PWWP_4 183 252 IPR000313 -
Cca03g02817 1024 SUPERFAMILY Tudor/PWWP/MBT 181 284 - -
Cca03g02817 1024 SMART PHD_3 653 709 IPR001965 -
Cca03g02817 1024 SMART PHD_3 358 410 IPR001965 -
Cca03g02817 1024 SMART PHD_3 542 589 IPR001965 -
Cca03g02817 1024 MobiDBLite consensus disorder prediction 972 1024 - -
Cca03g02817 1024 ProSiteProfiles Extended PHD (ePHD) domain profile. 594 709 IPR034732 -
Cca03g02817 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 537 591 IPR013083 -
Cca03g02817 1024 Coils Coil 255 275 - -
Cca03g02817 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 415 IPR013083 -
Cca03g02817 1024 Pfam SET domain 840 945 IPR001214 GO:0005515
Cca03g02817 1024 ProSiteProfiles Zinc finger PHD-type profile. 540 591 IPR019787 -
Cca03g02817 1024 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 960 - -
Cca03g02817 1024 SUPERFAMILY FYVE/PHD zinc finger 540 605 IPR011011 -
Cca03g02817 1024 Pfam PHD-zinc-finger like domain 596 708 - -
Cca03g02817 1024 CDD PHD_ATX3_4_5_like 542 588 IPR042011 -
Cca03g02817 1024 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 976 IPR025780 -
Cca03g02817 1024 PANTHER PHD FINGER PROTEINS 1 960 - -
Cca03g02817 1024 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g02817 1024 SUPERFAMILY SET domain 828 959 IPR046341 -
Cca03g02817 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 710 IPR013083 -
Cca03g02817 1024 CDD SET_SETD1-like 818 960 - -
Cca03g02817 1024 SMART set_7 829 952 IPR001214 GO:0005515
Cca03g02817 1024 Gene3D - 175 288 - -
Cca03g02817 1024 CDD PHD_TCF19_like 359 409 - -
Cca03g02817 1024 MobiDBLite consensus disorder prediction 1 15 - -
Cca03g02817 1024 Pfam PHD-finger 555 589 - -
Cca03g02817 1024 ProSitePatterns Zinc finger PHD-type signature. 543 588 IPR019786 -
Cca03g02817 1024 Pfam PHD-finger 358 411 IPR019787 -
Cca03g02817 1024 Pfam PWWP domain 187 282 IPR000313 -
Cca03g02817 1024 Gene3D SET domain 795 954 IPR046341 -
Cca03g02817 1024 ProSiteProfiles PWWP domain profile. 185 254 IPR000313 -
Cca03g02817 1024 ProSiteProfiles Zinc finger PHD-type profile. 356 412 IPR019787 -
Cca03g02817 1024 SUPERFAMILY FYVE/PHD zinc finger 355 418 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02817 Cca-Chr3 49508816 49525424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02817 543 695 C2H2 Transcription Factor Family AT3G14740 34.568 2.89e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca03g02817 zf-HC5HC2H_2 5.5e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02817 - - gmx:100785063 1477.23