Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g02814 | ATGGAACTCACCACAAAACTCTTCTCAGTGTTGGTTTTATGCGCGATTGTATTGTTACACCAAACAACTGCCCAAGAAACAAGAGGAAAGGAACTAATCCAAAAGGTATGCACAACTGCCCCAAATAGGAACCTTTGTGTGGATGTTTTATCATCAGACCCTAGCCGAAGCCCCGATGCAGACCTCAAAGACTTGGCAATCATATCTCTTAGGGTTGCTGCCAAAAACGCATCTGGCATGCTTACCGACGCCAAAAGGCTTATCAATAATGCTAACCTTAACCCTGACATTCAACAAGGTTTAGCTGATTGCAAGGAGACAATCTTGGACGCAGAGAGCCAGCTTGAGGACACCATCGCTGCCTTGTTGGTTGATTCTAACTCCGACGCTCAAGTTTGGTTGAGGGCTGCTTTAGCCGCAATCGACACTTGTGACGCCTCCATCCCTGGAGATGATGACATTCTCTCTGTTAAGAGCATTGTCCTCCGTAAGTTGTGCAACATCGCCATCGCCATTAATGGTCTCTTGAACAAACCTGGCCTTTTGAACAAACCTACTCTCTTGAACAAACCTTTAAAATTCTATCCTTTCATGTAA | 597 | 0.4506 | MELTTKLFSVLVLCAIVLLHQTTAQETRGKELIQKVCTTAPNRNLCVDVLSSDPSRSPDADLKDLAIISLRVAAKNASGMLTDAKRLINNANLNPDIQQGLADCKETILDAESQLEDTIAALLVDSNSDAQVWLRAALAAIDTCDASIPGDDDILSVKSIVLRKLCNIAIAINGLLNKPGLLNKPTLLNKPLKFYPFM | 198 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g02814 | 198 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 8 | 174 | IPR006501 | GO:0004857 | |
| Cca03g02814 | 198 | Pfam | Plant invertase/pectin methylesterase inhibitor | 32 | 172 | IPR006501 | GO:0004857 | |
| Cca03g02814 | 198 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 30 | 176 | IPR035513 | - | |
| Cca03g02814 | 198 | PANTHER | PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR | 1 | 167 | - | - | |
| Cca03g02814 | 198 | CDD | PMEI-like_1 | 32 | 176 | - | - | |
| Cca03g02814 | 198 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 28 | 176 | IPR035513 | - | |
| Cca03g02814 | 198 | SMART | PMEI_2 | 28 | 172 | IPR006501 | GO:0004857 | |
| Cca03g02814 | 198 | PANTHER | PECTINESTERASE | 1 | 167 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g02814 | Cca-Chr3 | 49493652 | 49494589 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca03g02814 | 31 | 144 | Carbohydrate Esterase | AT5G53370 | 27.119 | 1.14e-06 | 46.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g02814 | - | - | gmx:102667060 | 267.314 |