Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02812 ATGGCTTCCAACCTTTGTTACTCTCTCTCCATATTTCTCATTCTTCTAATAACAGCTTCCGCAGACAGTGGTCAAAACCTCAGCACCCCTGTCTCACCCGGAACGGCGTGCAAATCCACGCCAGACCCCTCCTTTTGCAAATCCGTTCTCCCTCCCCAAAACGACAACGTTTACGACTACGGTCGTTTCTCCGTCAAAAAGTCACTATCACAGGCGCGCAAGTTCTTGAACCTAGTCGACAAATATCTCCAACGTGCCTCTTCTCTCTCCGCCGCCGCCACACGCGCGCTTCAAGATTGCCGCACGCTCGGGGAACTCAACTTCGATTTCCTCTCAACCTCCTTCCAAACCGTGAACAAGACAACCAGGTTTCTCCCTAGTTTCCAAGCCCAGGACATTCAAACGTTGCTCAGTGCCATTCTCACCAACCAACAAACATGCTTGGACGGTCTCAAAGACACTGCTTCCGCTTGGAGCGTCAGGAACGGCCTCACTGTCCCACTCTCCAACGACACCAAACTCTACACTGTCTCTCTCGCGCTCTTCACCAAGGCTTGGGTTCCCAAAACCAAACCCAAGCCCAACGCAATGCTGCACCACGCTAAACTTATTGGGTTTCGAAACGGCCGTTTGCCGCTTAAGATGTCCACCAGAACGCGCGCCATCTACGAGTCCGTCAGTAGGAGGAAGCTGCTTCAGGCCTCGGTGGGTGGTGAGGTTAATGTCAGTGATATTGTGACGGTGAGCCAAGATGGAAGTGGGAACTTCACCACCATCAGTGACGCCATTGCTGCGGCACCTAACAAATCTGTCTCCACCGATGGCTACTTTCTTATCTATGTTACTGCCGGTGTGTACCAGGAAAATGTGTCCATTGATAAGAAGAAGACGTACTTGATGATGGTCGGGGACGGTATCAACAAGACCATTATCACAGGCAATCGCAGTGTCGTTGATGGCTGGACAACCTTCAGCTCTGCAACGTTGGCTGTGGTTGGGCAAGGATTCGTGGGTGTGAACATGACCATCCGCAACACCGCGGGAGCCGTGAAGCACCAAGCGGTGGCACTCCGAAACGGAGCAGATTTATCGACGTTCTACAGTTGCAGCTTCGAGGGGTACCAAGACACGCTGTACGTACACTCGATGAGACAGTTCTACAGGGAATGCGACATCTACGGCACGGTAGATTtcatattcggaaacgccaaggtggtgttccaaagttgcaacatgtaccctcgtctccccatgagtggtcaattcaacgccatcaccgcacaaGGAAGAACGGACCCAAACCAAGACACGGGAATTTCCATCCACAACTGTACCGTGAGAGCTGCCGATGACTTGGCAGCTAGCAACGGCGTTTCAACGTATTTGGGGAGGCCGTGGAAGGAGTATTCAAGAACGGTTTTTATGCAGAGTTTTATGGACAGTGTGATAAACGGTGCGGGGTGGCGTGAATGGGACGGTGATTTTGCGTTGAGCACTTTGTACTATGCAGAGTTCGGTAACAGTGGGGCAGGGTCCAGCACCGCCAACAGAGTGACGTGGCCTGGTTATCACGTGATTAATGCCACGGATGCAGCCAACTTTACTGTGTCCAGTTTTTTGCTTGGAGATGATTGGTTACCGCAGACGGGAGTCACTTACACTGATAATTTGTTATAG 1677 0.4884 MASNLCYSLSIFLILLITASADSGQNLSTPVSPGTACKSTPDPSFCKSVLPPQNDNVYDYGRFSVKKSLSQARKFLNLVDKYLQRASSLSAAATRALQDCRTLGELNFDFLSTSFQTVNKTTRFLPSFQAQDIQTLLSAILTNQQTCLDGLKDTASAWSVRNGLTVPLSNDTKLYTVSLALFTKAWVPKTKPKPNAMLHHAKLIGFRNGRLPLKMSTRTRAIYESVSRRKLLQASVGGEVNVSDIVTVSQDGSGNFTTISDAIAAAPNKSVSTDGYFLIYVTAGVYQENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFSSATLAVVGQGFVGVNMTIRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYVHSMRQFYRECDIYGTVDFIFGNAKVVFQSCNMYPRLPMSGQFNAITAQGRTDPNQDTGISIHNCTVRAADDLAASNGVSTYLGRPWKEYSRTVFMQSFMDSVINGAGWREWDGDFALSTLYYAEFGNSGAGSSTANRVTWPGYHVINATDAANFTVSSFLLGDDWLPQTGVTYTDNLL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02812 558 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Cca03g02812 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 184 IPR035513 -
Cca03g02812 558 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 183 IPR006501 GO:0004857
Cca03g02812 558 SMART PMEI_2 28 181 IPR006501 GO:0004857
Cca03g02812 558 Pfam Pectinesterase 246 543 IPR000070 GO:0030599|GO:0042545
Cca03g02812 558 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 22 556 - -
Cca03g02812 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 185 IPR035513 -
Cca03g02812 558 CDD PMEI-like_3 35 186 - -
Cca03g02812 558 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857
Cca03g02812 558 Gene3D - 239 557 IPR012334 -
Cca03g02812 558 PANTHER PECTINESTERASE 22 556 - -
Cca03g02812 558 SUPERFAMILY Pectin lyase-like 243 554 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02812 Cca-Chr3 49482191 49484717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02812 8 558 Carbohydrate Esterase AT4G02330 63.700 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02812 K01051 - gmx:100800971 976.467