Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02811 ATGGTTATGGCTTTCAACAACTTGTTCCTTCTTACTTTCTGTGTCTCCCTTATGCTATCCTTGGCATCGATTTCCATAGCTGAAAATAACCATGCAGCTGTTCCACCAGAAACTATATGCCAGTCAACCATGGACCCTACTTACTGCAAATCTGAGTTTGCTAATCTAAATGGTAGCTATAACATATACGACTATTGCCGCATTTCTGTTCGATACTCCTTGTCCCAGTCTCGAAAGTTCTTGAACACCATGTATTCGTATCTTCAAAATCCATCGTCTTTCTCTCAACCAACAGTTCGTGCTCTCCAAGATTGTCAATTCCTTGCTGAGCTAAACGTTGATTACTTATTAACAATTCATGACACTGTTGATAAAGCTGGCGATGTTCTTCCCACCTCTCAAGAAGAGGATGTTCACACATTGCTTAGTGCTGTTTTGACAAATGAACAAACCTGTTTAGATGGCCTGCAAACTTCAGCTTCTTCAAATCCAAGAGTGAGGAACGATCTTTCTTCCGTACTCTCGAATGATACCAAGCTTCACACTGTCTCACTTGATTTGTTTACCAAGGCTTGGGTTCCTGAGAACAAAATCTCATGGCAACAACATGGGAGCATCAAGAATGATCGTGTACCCTTGAAGATGTCAAACAAAGCACGTGCCATTCATGGCAATGGGAGAAAACTACTTCAAACATTGGATAACAATGAAAGCATAGTGGTGAATGATTCTGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTTACCACTATCAACGAAGCTATAGCTGCTGCACCAAATAACACTGCTGCTGCCGATGGCTACTTCGTCATTTTTATCACCGAGGGTATATATCAAGAATATGTATCTATAGCAAAAAACAAAAAGTACTTGATGTTAATCGGAGATGGAATCAACAGGACAATTATCACTGGGGATCACAACGTTGTTGATGGCTTTACAACATTCAACTCGGCCACATTTGCTGTGGTAGCAGAAGGATTCGTAGCAATGAACATAACATTCCGCAACACTGCTGGACCGAGCAAGCACCAAGCAGTGGCTGTAAGAAATGGAGCTGACATGTCCACCTTCTATAGCTGTAGCTTTGAAGGGTACCAAGACACCTTATACACTCATTCCATGAGGCAGTTTTATCGCGAATGTGACATATACGGCACAGTTGACTTCATATTTGGAAATGGAGCTGTTGTTTTGCAAAACTGCAACTTATATCCCCGTCTCCCCATGAGTGGACAATTCAATGCCATCACTGCGCAAGGTAGAACCGATCCAAATCAAAACACCGGCATTTCCATACAAAATGCGACCATAAAAGCAGCACAGGATTTGGCTCCCGTGGTTGGAACGGTGGAAACATACCTTGGGAGGCCATGGAAGGAGTACTCAAGAACCGTTTATATGCAGTCTTTCATGGACAGTTTGATAGCTCCTGTTGGGTGGCATGATTGGAATGGAAGTTTTGCATTGAGCACGTTGTACTATGCAGAGTATGATAACAATGGTCCTGGTTCAAATACTACAAACCGCGTCACGTGGCCTGGTTATCATGTTATCGATGCTACTGAGGCAGCTAACTTTACTGTGTCCAACTTCTTGGATGGAGATGTTTGGTTGCCTCGTACTAGCGTTCCTTTCCAAACGTCTTTGTAA 1674 0.4259 MVMAFNNLFLLTFCVSLMLSLASISIAENNHAAVPPETICQSTMDPTYCKSEFANLNGSYNIYDYCRISVRYSLSQSRKFLNTMYSYLQNPSSFSQPTVRALQDCQFLAELNVDYLLTIHDTVDKAGDVLPTSQEEDVHTLLSAVLTNEQTCLDGLQTSASSNPRVRNDLSSVLSNDTKLHTVSLDLFTKAWVPENKISWQQHGSIKNDRVPLKMSNKARAIHGNGRKLLQTLDNNESIVVNDSVVVSQDGSGNFTTINEAIAAAPNNTAAADGYFVIFITEGIYQEYVSIAKNKKYLMLIGDGINRTIITGDHNVVDGFTTFNSATFAVVAEGFVAMNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNGAVVLQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGISIQNATIKAAQDLAPVVGTVETYLGRPWKEYSRTVYMQSFMDSLIAPVGWHDWNGSFALSTLYYAEYDNNGPGSNTTNRVTWPGYHVIDATEAANFTVSNFLDGDVWLPRTSVPFQTSL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02811 557 Gene3D - 239 557 IPR012334 -
Cca03g02811 557 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Cca03g02811 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 190 IPR035513 -
Cca03g02811 557 PANTHER PECTINESTERASE 16 556 - -
Cca03g02811 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 190 IPR035513 -
Cca03g02811 557 SMART PMEI_2 31 187 IPR006501 GO:0004857
Cca03g02811 557 Pfam Plant invertase/pectin methylesterase inhibitor 37 172 IPR006501 GO:0004857
Cca03g02811 557 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 182 IPR006501 GO:0004857
Cca03g02811 557 CDD PMEI-like_3 38 192 - -
Cca03g02811 557 Pfam Pectinesterase 245 543 IPR000070 GO:0030599|GO:0042545
Cca03g02811 557 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 16 556 - -
Cca03g02811 557 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02811 Cca-Chr3 49471950 49474218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02811 8 557 Carbohydrate Esterase AT4G02330 58.290 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02811 K01051 - gmx:100792847 913.679