Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02810 ATGGCTTTCACGAACTTGTCCCTTCTTACACTCTGTGTTACCCTTGTGCTATCCTTCTTCGCACCGATTTCCATAGCTGCTAATAATAACCATGAAGTCGTTCCCCCAGAAACCATTTGCAACTCCACCGTAGACCCTTCCTTCTGCAAAACTGTGCTCGCTAACCAAAATGGCACCATCATTGACTATGGCAGAATTTCTATCCGGAAGTCCTTGTCCCAGTCCCGAAAATTCTTGAACTCAGTAAATTCACTTCTTCAAGACAAATCCTCTTTGTCCCTACCCACAATTGGAGCCCTTGAAGACTGTAAATTCCTCGCTGAACTAAACTTTGAATACTTATCAAACGCACTTGATGCTGCTGACAATGCTAGCGATGTTCTTGCCAACGCTCAAGCCGAAGAACAACAAACCCTACTTAGTGCTGTTTTGACAAACGAAGAAACTTGTTTAGAAGGGTTACAAACCACAGATTCAGATCAAAGAGTGAAGAGCAATCTTTTGTCCTCACTCTCTGATGACAAGAAGCTTCACAGTGTTTCCCTTGACTTGTTCACAAAAGGTTGGGTGCCTGAGAAGAAAATCCAAACATCATTTCAATCCAATGGGAGGCATTTGGGTTTCCGCAACGGTCGTTTACCATTAAAGATGTCAAACCGTGTACGTGCCATTTACGATTCTGCTAGAGGTCACGGGAGAAAGCTACTTCAAGATAGCAGCGAAAGTGTATTGGTTAATGACATCGTGGTTGTTAGCCAAGATGGAAGCGGGAACTTCACCACTATCAACGATGCTATAGCAGCTGCGCCAAATAACACAGTTGCTAGTAATGGCTACTTTCTAATTTTTGTCACACAAGGTGTGTATCAAGAGTATGTTTCCATAGCCAAAAACAAAAAGTACTTGATGATGGTTGGAGATGGGATCAACCAAACGATTATCACCGGTGATCACAATGTTGTCGATAACTTCACAACATTCAACTCAGCTACATTTGCTGTGGTGGCACAAGGGTTCGTAGCAGTTAACATAACATTTCGAAACACTGCGGGGCCAAGTAAACACCAAGCAGTTGCAGTGAGAAACGGAGCTGACATGTCCACCTTCTATAGCTGCAGCTTTGAAGGGTATCAAGACACATTGTACACGCACTCTCTTAGACAGTTTTACCGTGAATGTGACATCTATGGAACCGTTGACTTCATATTCGGAAATGCAGCTGTTGTTTTCCAAACATGTAACATATATCCCCGCCTTCCCATGAGTGGACAATTCAATGCCATCACTGCACAAGGCCGAACAGATCCAAACCAAAACACAGGAACTTCCATACACAACGCAACTATAAAAGCTGCTGATGATTTGGCTCCTGTGGTTGGAACCGTGAACACCTACCTTGGGAGGCCATGGAAGGAATACTCAAGGACAGTTTTTATGCAGTCTTTCATGGATAGTTTGATAAAACCTTCTGGTTGGAAAGAATGGAGTGGGGATTTTGCCCTAAGCACGTTGTACTACGCAGAGTATAATAATACTGGACCTGGTTCAAACACTAGTAACCGAGTGACATGGTCTGGTTATCATGTTATCAATGCTACTGATGCGGCTAATTTTACTGTCTTTAACTTCTTGGATGGGGATGATTGGCTACCTCAAACTGGCGTCCCATACTTGAGCGGGTTGATTTTGACATAG 1695 0.4336 MAFTNLSLLTLCVTLVLSFFAPISIAANNNHEVVPPETICNSTVDPSFCKTVLANQNGTIIDYGRISIRKSLSQSRKFLNSVNSLLQDKSSLSLPTIGALEDCKFLAELNFEYLSNALDAADNASDVLANAQAEEQQTLLSAVLTNEETCLEGLQTTDSDQRVKSNLLSSLSDDKKLHSVSLDLFTKGWVPEKKIQTSFQSNGRHLGFRNGRLPLKMSNRVRAIYDSARGHGRKLLQDSSESVLVNDIVVVSQDGSGNFTTINDAIAAAPNNTVASNGYFLIFVTQGVYQEYVSIAKNKKYLMMVGDGINQTIITGDHNVVDNFTTFNSATFAVVAQGFVAVNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQTCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNATIKAADDLAPVVGTVNTYLGRPWKEYSRTVFMQSFMDSLIKPSGWKEWSGDFALSTLYYAEYNNTGPGSNTSNRVTWSGYHVINATDAANFTVFNFLDGDDWLPQTGVPYLSGLILT 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02810 564 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 18 560 - -
Cca03g02810 564 PANTHER PECTINESTERASE 18 560 - -
Cca03g02810 564 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Cca03g02810 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Cca03g02810 564 Coils Coil 114 134 - -
Cca03g02810 564 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Cca03g02810 564 Gene3D - 243 561 IPR012334 -
Cca03g02810 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 187 IPR035513 -
Cca03g02810 564 SMART PMEI_2 31 184 IPR006501 GO:0004857
Cca03g02810 564 Pfam Pectinesterase 249 547 IPR000070 GO:0030599|GO:0042545
Cca03g02810 564 SUPERFAMILY Pectin lyase-like 246 560 IPR011050 -
Cca03g02810 564 CDD PMEI-like_3 38 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02810 Cca-Chr3 49462033 49464224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02810 13 562 Carbohydrate Esterase AT1G02810 59.896 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02810 K01051 - gmx:100786124 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02810 03 49462033 49464224 Cca02g01246 02 30387239 30392859 PCT