Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02809 ATGTATAACCCCCTCAGTAGAAGAACACCACCACCACCAACCATGCTATTCCACGTACCCATTCTCTTTCTCCTCCTTTGTTCCTTCACCGCAAACGcaacaacaacagcaacaaccacTCCCCTCCATCTCCAAGTAGCTAACTCCACATGCGAAGGCACACTCTACCCTCACCTCTGCGTCTCAACCCTTTCCTCCTTCCCCGACCTCACCTCAAAAACCCTCCCACAGACCATATGCACCCTCGTCAACCACACCATCTCCGAAGTCACACACTCCTCCTCCAACTGCACCGACCTCCGCAAGCACCTCCCAGCCCTCACCACCCTCGAACGCCGAGCCCTCGACGACTGCCTCTCCCTCTTCGACGGCACCGTCTCTGAGCTCCGAACCACCGTCGCCGACCTCTCCCAAGCCGCCATAGGCTCCAAGCTCTACCACGACTCCCAGACTCTCCTCAGCGCCGCCATGACCAACCTCTACACGTGCCTCGACGGCTTCGCCTACAGCAAAGGGAACGTGAGGGACAGGATTCAGGAGGGTTTGTTCCAGATCTCGCACCACGTCAGTAACTCCCTCGCAATGCTGAAGAAAGTGCCCGGAGTGTCGTCGCCGAATGAGGCGTTCCCTGAATACGGTGAGGCGAAAAAGGGGTTCCCGTCGTGGCTGTCACGCAAAGACCGGAAGCTGCTTCAGGCTGCTGTCAATGAAACCAACTTCGATCTTGTTGTGGCAAAAGATGGCACTGGAAACTTCACCACCATAGGAGAAGCACTTGCTGCGGCTCCAAACTCCACCACAACTAGATTTGTGATATACATAAAAGCCGGGGCATACTTCGAGAATGTGGAGGTGATAAGGAAGAAAACCAATCTCATGTGGGTTGGAGATGGAATTGGAAAGACAGTGGTGAAGGCCAGTAGGAATGTTGTGGACGGCTGGACCACTTTCCAATCAGCCACTGTCGCTGTGGTTGGAGAGGGATTCATAGCAAAGGGCGTAACCTTTGAGAACTCAGCAGGGCCCAGCAAGCACCAAGCCGTGGCCCTAAGGAGCGGGGCTGACTTATCAGTCTTCTACCAATGCAGCTTCGTTGCATACCAAGACACTCTCTACGTCCACTCTCTGCGACAATTCTACCGCGAATGCGACGTTTACGGCACCGTAGACTTCATCTTTGGCAACGCCGCAGTGGTGTTCCAGAACTGCAACTTGTACGCACGCAAGCCTAACGAAAACCAAAAGAACCTCTTCACCGCACAGGGCAGAGAAGACCCTAACCAAAACACCGGCATTTCCATCATCAACTGCAAGGTTGCAGCTGCTGCAGATTTGATCCCAGTGAAAAGCTCGTTCAAGAACTACCTGGGTCGGCCTTGGAAAAAGTATTCCAGAACTGTTTATCTAAATTCTTATATGGAGGATCTTATAGACCCTGCAGGGTGGTTAGAGTGGAATGGCACGTTTGCATTGGATACCTTGTATTATGGGGAGTATAATAATCGAGGTCCGGGTTCCAATACAAGTGCTAGAGTTACTTGGCCTGGTTATAGGGTCATCACTAACTCCACTGAGGCTAGCCAGTTCACAGTTCAAAATTTCATTCAAGGCAATGAATGGTTGAACTCCACCGCTGTTCCCTTCTTCTCTGGTTTTAGTTGA 1662 0.515 MYNPLSRRTPPPPTMLFHVPILFLLLCSFTANATTTATTTPLHLQVANSTCEGTLYPHLCVSTLSSFPDLTSKTLPQTICTLVNHTISEVTHSSSNCTDLRKHLPALTTLERRALDDCLSLFDGTVSELRTTVADLSQAAIGSKLYHDSQTLLSAAMTNLYTCLDGFAYSKGNVRDRIQEGLFQISHHVSNSLAMLKKVPGVSSPNEAFPEYGEAKKGFPSWLSRKDRKLLQAAVNETNFDLVVAKDGTGNFTTIGEALAAAPNSTTTRFVIYIKAGAYFENVEVIRKKTNLMWVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGEGFIAKGVTFENSAGPSKHQAVALRSGADLSVFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISIINCKVAAAADLIPVKSSFKNYLGRPWKKYSRTVYLNSYMEDLIDPAGWLEWNGTFALDTLYYGEYNNRGPGSNTSARVTWPGYRVITNSTEASQFTVQNFIQGNEWLNSTAVPFFSGFS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02809 553 SUPERFAMILY Pectin lyase-like 239 551 IPR011050 -
Cca03g02809 553 Gene3D - 235 552 IPR012334 -
Cca03g02809 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 198 IPR006501 GO:0004857
Cca03g02809 553 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Cca03g02809 553 Pfam Pectinesterase 241 538 IPR000070 GO:0030599|GO:0042545
Cca03g02809 553 PANTHER PECTINESTERASE 24 549 - -
Cca03g02809 553 SMART PMEI_2 42 195 IPR006501 GO:0004857
Cca03g02809 553 PANTHER PECTINESTERASE 24 549 - -
Cca03g02809 553 CDD PMEI-like_3 49 201 - -
Cca03g02809 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 199 IPR035513 -
Cca03g02809 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 201 IPR035513 -
Cca03g02809 553 Pfam Plant invertase/pectin methylesterase inhibitor 48 195 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02809 Cca-Chr3 49443085 49448313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02809 71 548 Carbohydrate Esterase AT4G02320 57.026 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02809 K01051 - gmx:100813592 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02809 03 49443085 49448313 Cca03g02809 03 49443085 49448313 ECH
Cca02g01246 02 30387239 30392859 Cca03g02809 03 49443085 49448313 PCT