Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02800 ATGTCCACCATCGTTGAGAATAACGGTGCCGTTTGTTACTATTCAGTGCTTGGGATTGGAAAAAATTCCACCGATCACGAAATTCGATGTGCTTATCGTAAGATGGCTCTGAAGTGGCATCCCGATAGGTGGATGAAGGACCCAAAGCTAGCGGTAGAAGCCAAAAAGCGATTTCAGTGTGTTCAAGAGGCTTATTCAGTTTTGTCCAATAAAGGGAAGAGAAGGATATATGATGCTGGCTTGTTTGGTCTGATTGGAGAGGACGATGATGAGGGATTTGTTGATTTCATGCAAGAAATGGCCTTGATGATGCAGAATGTCAGAACCAAGGATGAGAAAGGCATGTTGGAGGATTTTGAAGGATTGGTAATGGATATGATGGCAGATAATGAAGGGATAGGGAAGTCTGGGTTAAGCTGGAATTCGTCTGCATGTCCTGCAAAGAAAACACGTATCTTATAA 462 0.4286 MSTIVENNGAVCYYSVLGIGKNSTDHEIRCAYRKMALKWHPDRWMKDPKLAVEAKKRFQCVQEAYSVLSNKGKRRIYDAGLFGLIGEDDDEGFVDFMQEMALMMQNVRTKDEKGMLEDFEGLVMDMMADNEGIGKSGLSWNSSACPAKKTRIL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02800 153 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 6-LIKE 5 152 - -
Cca03g02800 153 Gene3D DnaJ domain 4 91 IPR036869 -
Cca03g02800 153 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Cca03g02800 153 Pfam DnaJ domain 13 78 IPR001623 -
Cca03g02800 153 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Cca03g02800 153 PANTHER PUTATIVE, EXPRESSED-RELATED 5 152 - -
Cca03g02800 153 SUPERFAMILY Chaperone J-domain 12 77 IPR036869 -
Cca03g02800 153 SMART dnaj_3 11 73 IPR001623 -
Cca03g02800 153 PRINTS DnaJ domain signature 14 32 IPR001623 -
Cca03g02800 153 PRINTS DnaJ domain signature 32 47 IPR001623 -
Cca03g02800 153 PRINTS DnaJ domain signature 53 73 IPR001623 -
Cca03g02800 153 CDD DnaJ 12 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02800 Cca-Chr3 49349843 49351507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02800 12 79 C2H2 Transcription Factor Family AT1G74250 47.826 6.22e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02800 - - gmx:100794942 258.07