Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02798 ATGTCCGCCGACACCCACTCCGCTCCTAATATCAACCCCAGGGGCCTTCTCTGCAATGCCGCCGCCGGTGCTTCCGCCGGGGTTATTGCTGCTACGTTCGTTTGTCCTTTAGATGTCATCAAAACTAGGTTTCAGGTTCATGGTGTCCCGCAGCTCGCGAATGGAACTGTTAAAGGCAGCCTGATAGTTTCTAGTTTGGAACAAATATTTCACAAGGAGGGCTTACGTGGCATGTACCGAGGGCTCGCGCCCACTGTGCTGGCTTTACTTCCGAACTGGGCGGTTTATTTTACTGCATATGAGCATCTTAAGAGCCTTCTTTCTTCTGATGATGAAAGCCGTCATCTTTCAATTGGAGCTAATATGGTAGCTGCTTCTGGTGCCGGAGCTGCCACTACCATGTTTACAAATCCCCTTTGGGTTGTCAAGACTAGACTTCAGACGCAGGGAATGAGACCTGGTGTTGTGCCATATAGAAGCACACTGTCTGCATTGAGGAGAATTGCTCATGAGGAGGGCATTCGGGGGCTGTACAGTGGCCTTGTACCTGCTCTGGCTGGTGTCAGTCATGTTGCCATCCAATTTCCCACATACGAGACAATAAAATTTTATTTGGCAAATAAAGATAACACAACAATGGATAAACTTGGTGCACGTGATGTTGCAATTGCTTCATCAGTTTCCAAAATTTTTGCATCAACTTTGACATATCCTCATGAGGTTGTACGTTCCAGACTGCAAGAACAAGGGCATCACTCAGAGAAACGGTACACTGGTGTGATTGACTGTGTTAGAAAGGTTTTTCAACAAGAAGGTGTACAAGGTTTTTACCGAGGTTGTGCCACCAACCTTCTGAGGACAACACCAGCTGCCGTAATCACATTTACCAGCTTTGAAATGATACACCGTTTTCTTGTTTCAGTTTTTCCTTCTGATCCACAGAATCATATTTTGTGA 957 0.4619 MSADTHSAPNINPRGLLCNAAAGASAGVIAATFVCPLDVIKTRFQVHGVPQLANGTVKGSLIVSSLEQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTAYEHLKSLLSSDDESRHLSIGANMVAASGAGAATTMFTNPLWVVKTRLQTQGMRPGVVPYRSTLSALRRIAHEEGIRGLYSGLVPALAGVSHVAIQFPTYETIKFYLANKDNTTMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYTGVIDCVRKVFQQEGVQGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSVFPSDPQNHIL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02798 318 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 317 IPR044712 GO:0006862|GO:0055085
Cca03g02798 318 SUPERFAMILY Mitochondrial carrier 16 300 IPR023395 -
Cca03g02798 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 106 IPR018108 -
Cca03g02798 318 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Cca03g02798 318 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Cca03g02798 318 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085
Cca03g02798 318 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085
Cca03g02798 318 PRINTS Mitochondrial carrier protein signature 225 247 IPR002067 GO:0055085
Cca03g02798 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 304 IPR018108 -
Cca03g02798 318 Pfam Mitochondrial carrier protein 116 208 IPR018108 -
Cca03g02798 318 Pfam Mitochondrial carrier protein 16 109 IPR018108 -
Cca03g02798 318 Pfam Mitochondrial carrier protein 222 306 IPR018108 -
Cca03g02798 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Cca03g02798 318 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 317 - -
Cca03g02798 318 Gene3D Mitochondrial carrier domain 113 309 IPR023395 -
Cca03g02798 318 Gene3D Mitochondrial carrier domain 3 112 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02798 Cca-Chr3 49327552 49332480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02798 1 318 Chloroplast and Mitochondria Gene Families AT2G47490 74.528 1.08e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02798 K15115 - gmx:100500213 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02798 03 49327552 49332480 Cca03g02798 03 49327552 49332480 ECH