Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02795 ATGGCGACGAGAAACCGAACTTTGGAGTTCAGGAAGCACAGAGACGCCGTGAAGAGCGTGCGCGCTCCTCTCTCCTCCTCAGCGTCTGCTTCCGCCGGTCCCGTCATCGAAATGGTTACAACTTCGCTTCTTCCTTCCAATCATCGTTCCTCCTATGCTCCTCTTAGCACCCACGATCCTGGCCCAGCCACATCTAGGGATGCATTTACTGTGGGGTTGCCGCCATCTTGGGTGGATGATTCTGAAGAAATAGCTACTAATATACAACGTGCTCGTGTTAAAATTTCTGAGTTAACCAAAGCTCATGCAAAGGCTTTGATGCCCTCCTTTGGGGATGACAAAGAGGATCAGCGTCATATTGAGACTCTCACCCTGGAAATTACGTCCCTCCTCAGAAAGTCTGAAGTGAGGCTTAAAAGACTTTCTGCTGCTGCTGGATCTTCTGAGGATTCTAATGTCAGAAAAAATGTACAGCGTTCCCTTGCTACAGACCTTCAGAACCTATCAATGGATCTCCGACGAAAGCAGTCAGCATATTTGAAACGCTTGCAGCAGCAAAAGGAGGTTGCATTGCAACTTTTACTGTGTAGCTAA 594 0.4815 MATRNRTLEFRKHRDAVKSVRAPLSSSASASAGPVIEMVTTSLLPSNHRSSYAPLSTHDPGPATSRDAFTVGLPPSWVDDSEEIATNIQRARVKISELTKAHAKALMPSFGDDKEDQRHIETLTLEITSLLRKSEVRLKRLSAAAGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQKEVALQLLLCS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02795 197 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 189 - -
Cca03g02795 197 SUPERFAMILY t-snare proteins 72 192 IPR010989 GO:0016020|GO:0016192
Cca03g02795 197 SMART SynN_4 68 184 IPR006011 GO:0016020
Cca03g02795 197 PANTHER SYNTAXIN 1 189 IPR045242 -
Cca03g02795 197 Gene3D - 74 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02795 Cca-Chr3 49316068 49318576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02795 1 188 SNARE and Associated Proteins AT4G02195 71.429 8.14e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02795 K08489 - gmx:100803629 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02795 03 49316068 49318576 Cca02g01434 02 32885049 32890240 ECH
Cca03g02795 03 49316068 49318576 Cca03g02795 03 49316068 49318576 ECH