Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02790 ATGTCTTCGGCACCGAAACTATTTGGTTTCCCACTAACAGAGCAAGAGGAATTTGCAGATGTGGGAGAGGACAGAAAATTCAGATGCCACTACTGCAAGCGAGTATTCGCTAACTCTCAAGCCTTAGGGGGCCACCAGAATGCTCACAAGAAAGAGCGTCAGAGAGCAAGGCGTTTCCAAATCCACACTCACCAATACCATAGACGCTCCCATGCAAATGCAATTACATCAGAAATGTGGTGGACAGCAGAAGTGACGTCATTCCGAGCGCAAAGGCCACTTTTCAAAGATCAGAACATTGCACATTCCTCGCCACTGCACTTCCCAATATACCCTTTAAGCATGGAGAGTCACGGGCGGAGGATGGAGGTGGTGAGTGGCAAAAGCCACGGTTGGAGTGGGACTCGGTCGCCGGACTCAACGAGGGCGAGTGAAAAGCCATGGAGAATAAGCGATCCAGAAACGAAGCGGAAGAAAAGGATAGCCAAGTACAAGGTTTACGGCGTGGAAGGGAAGGTTAAGGCTACGCTCCGGAAAGGGCTTCGGTGGATCAAGAAAAAGTGCTCTCAGATCGCCCATGGCTACTAG 588 0.5051 MSSAPKLFGFPLTEQEEFADVGEDRKFRCHYCKRVFANSQALGGHQNAHKKERQRARRFQIHTHQYHRRSHANAITSEMWWTAEVTSFRAQRPLFKDQNIAHSSPLHFPIYPLSMESHGRRMEVVSGKSHGWSGTRSPDSTRASEKPWRISDPETKRKKRIAKYKVYGVEGKVKATLRKGLRWIKKKCSQIAHGY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02790 195 Gene3D Classic Zinc Finger 13 82 - -
Cca03g02790 195 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED 118 195 - -
Cca03g02790 195 Pfam Domain of unknown function (DUF3511) 151 194 IPR021899 -
Cca03g02790 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Cca03g02790 195 PANTHER DUF3511 DOMAIN PROTEIN 118 195 - -
Cca03g02790 195 Pfam C2H2-type zinc finger 27 52 - -
Cca03g02790 195 MobiDBLite consensus disorder prediction 127 155 - -
Cca03g02790 195 SUPERFAMILY beta-beta-alpha zinc fingers 24 54 IPR036236 -
Cca03g02790 195 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02790 Cca-Chr3 49271808 49273671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02790 6 64 C2H2 Transcription Factor Family AT5G06650 42.466 1.97e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02790 DUF3511 2.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02790 - - ccaj:109814731 165.236