Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02788 ATGGGTAGAGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAAGGGAGGTGGACAGAGGAGGAGGATGAAATTTTGGCCAAGTACATTCAGGCCAATGGAGAAGGTTCTTGGAGGGCATTGCCAAAAAAAGCAGGGCTGCTAAGGTGTGGGAAGAGTTGCAGGCTTAGGTGGATTAACTATTTGAGAGCTGATCTCAAACGTGGGAACATTTCTGTTGAGGAGGAAACTACCATCGTCAAATTGCATGCTTCGTTTGGCAACAGGTGGTCGTTGATAGCAAGTCACTTGGCTGGAAGAACAGACAACGAGATAAAAAACTATTGGAACTCTCACTTGAGCAGAAAAATCTACAGCTTCCGCGGCGGGACAAGTAATAAAGACTTCATCACCGGTACCCTACCCCCCAGCCGGAAACGTGGTAGGACCAGTCGATGGGCCATGAAGAAGAACAAATCCTATGCCCACAAACAAATTCACTCTACTCATAACAACCAACCACTTGAGACCCACAATTTCCCCACCAATATTAGTGCCCATCACCAACAAAATCTTGCAACTCAAGAACAAAACCTTTGTGAGGAAGCTGTACATCTTGTTAATGATATCATGATGGACAATTGCTGGAAGGAACCAAGTGGGGCTTTGGCCTTTTTTGGTAGCAATGATGTGGTTCGGAATATTCAAAGTGGTGACGACACGTGTGCCAACAAAATTATTGGGGAGTTACGTTCTTCCTCCTCCGTGGCTTCGGGCTTGGACGATGATAACTGGGACTGGGAAAGCATGGTGCACTTCGATCATGAAGACCTCCTCACTTGGTTGTGTGAAGATGAAGACCGAGAAACGGATTTTCAGAGCTTTCGAGAGATTGATCCATAG 879 0.4608 MGRAPCCEKVGLKKGRWTEEEDEILAKYIQANGEGSWRALPKKAGLLRCGKSCRLRWINYLRADLKRGNISVEEETTIVKLHASFGNRWSLIASHLAGRTDNEIKNYWNSHLSRKIYSFRGGTSNKDFITGTLPPSRKRGRTSRWAMKKNKSYAHKQIHSTHNNQPLETHNFPTNISAHHQQNLATQEQNLCEEAVHLVNDIMMDNCWKEPSGALAFFGSNDVVRNIQSGDDTCANKIIGELRSSSSVASGLDDDNWDWESMVHFDHEDLLTWLCEDEDRETDFQSFREIDP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02788 292 Gene3D - 71 116 - -
Cca03g02788 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca03g02788 292 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 190 - -
Cca03g02788 292 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca03g02788 292 CDD SANT 16 61 IPR001005 -
Cca03g02788 292 PANTHER MYB TRANSCRIPTION FACTOR 2 190 - -
Cca03g02788 292 Gene3D - 11 67 - -
Cca03g02788 292 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca03g02788 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca03g02788 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca03g02788 292 CDD SANT 71 112 IPR001005 -
Cca03g02788 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca03g02788 292 SMART sant 66 114 IPR001005 -
Cca03g02788 292 SMART sant 13 63 IPR001005 -
Cca03g02788 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02788 Cca-Chr3 49252100 49256385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02788 1 249 MYB Transcription Factor Family AT5G49330 49.446 7.46e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g02788 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02788 K09422 - gmx:100788260 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02788 03 49252100 49256385 Cca03g02788 03 49252100 49256385 ECH
Cca03g02788 03 49252100 49256385 Cca02g01268 02 30750538 30756585 PCT