Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02779 ATGGCAGAGGTTGTCTTGCTAGTCGATGATTTGAAATTACTTTCTGGGGTTCCTCGTTGTAGAATATGTCATGAAGAAGAGTTTGAAAGCTCAGAAACCATGGAAGCACCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACAACATGTGAATTATGTCTCCAGCAATATGAACCCGGATACACAGTTCCGCCAAAGAAGTCTAAGATAAATGATGAAGCAACGTCCATTAGGGATGAGGAAGAAGCATCAAACGGAAGAATAGAGATTATGGTTGAAGGAGTTGCAATAGAAAGCGAGTACTCTGAATGCAGCTCAGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTAGCTATAGCTGTAAGCATTATCTTAATAAAATTCATATTCCACTCTTCATTCCAATGTTGTCAGTGTTGCACTTGTCAAAGTCCACTCAGACACCGCTATTGCCAACTGGGTGCCAACGCAGCCCCGGCATTTTCTTTCATGTGGCTCTTGGATTAA 552 0.4312 MAEVVLLVDDLKLLSGVPRCRICHEEEFESSETMEAPCACSGTVKFAHRDCIQRWCNEKGNTTCELCLQQYEPGYTVPPKKSKINDEATSIRDEEEASNGRIEIMVEGVAIESEYSECSSAADRSASCCRSLAIAVSIILIKFIFHSSFQCCQCCTCQSPLRHRYCQLGANAAPAFSFMWLLD 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02779 183 SMART ringv_2 19 68 IPR011016 GO:0008270
Cca03g02779 183 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Cca03g02779 183 SUPERFAMILY RING/U-box 18 72 - -
Cca03g02779 183 CDD RING_CH-C4HC3_MARCH 20 67 - -
Cca03g02779 183 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Cca03g02779 183 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Cca03g02779 183 Pfam Protein of unknown function (DUF3675) 73 141 IPR022143 -
Cca03g02779 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Cca03g02779 183 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 144 - -
Cca03g02779 183 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 144 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02779 Cca-Chr3 49163664 49165388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02779 20 108 C3H Transcription Factor Family AT2G37950 32.222 1.78e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02779 - - gmx:100802379 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02779 03 49163664 49165388 Cca03g02779 03 49163664 49165388 ECH
Cca03g02779 03 49163664 49165388 Cca02g01276 02 30890497 30893208 PCT