Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02777 ATGAGCACCAAGGACCTCAATTTCGATGCAGACAAAGCTCTGGCGAAAGAGTTTCTTTCCAGCTTCGCAGATGCCAATGGCGAAGCCAAATACATGAACATTCTGCAAGATGTCGCGAACCACAAAACACGAGCAGTTCAGATCGACCTCGAGGACTTAATTAACTACAAAGATCTGGATGAGGAGTTTCTGAGGCGTGTTACTGAGAACACTCGAAGGTATATTGGGATTTTTTCCAATGCAATTGACGAGCTCATGCCGGAGTCCACTGAGGCCTTCACTGATGATGACCATGACATATTGATGACTCAGAGATCCGACGAAGGACCCGAAGGCACCGATGGTTTTGATCCACTTCAAAAGATGCCTCCTGAAATCAAGCGCTACTATGAGGTTTATATTAAAGCATCTTCAAAAGGACGGCCATTTACAATTAGGGAGGTGAAGGCTTCCAACATTGGTCAGCTTGTGAGAATCTCTGGCATTGTGACGCGATGCTCAGATGTTAAACCGTTGATGAAAGTGGCTGTATACACATGCGAGGATTGTGGTTTTGAAATTTACCAGGAAGTAACAGCTCGAGTCTTCATGCCTTTGTTTGAGTGTCCATCAAAGCGTTGTGATACAAATAGACGTAAGGGGAATGTTATCCTTCAATTGAGAGCATCAAAATTTTTGAGATTTCAAGAGGCCAAAATTCAAGAATTATCTGAGCATGTTCCCAAAGGCCATATTCCACGAACAATGACTGTTCATTTAAGAGGAGAACTCACAAGAAAGGTTTCTCCTGGTGATGTGGTTGAATTGTCCGGGATTTTTCTGCCTATAGCGTACTCTGGTTTTCGAGCAGTGCGTGCCGGCTTAGTTGCTGACACCTATTTAGAGGCCATGTCTGTAACTCATTTCAAGAAAAAATATGAAGACTATGAACTTCTAGGAGATGAAGAAGAACAAATAGCACGGTTAGCAGAGGATGGTGACATCTACAACAAATTGGCACGATCACTTGCTCCTGAAATTTTTGGACATGATGACATTAAAAAGGCACTGCTTCTTCTCCTTGTTGGTGCTCCCCATCGGAAGTTGAAAGATGGAATGAAGATTAGAGGAGATTTACATATATGTTTGATGGGTGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACACATAATCAACGTAGCACCCAGAGGGGTGTACACCACTGGCAGAGGAAGTAGTGGAGTTGGTCTAACTGCTGCTGTTCAGAAAGATCCAGTGACAAATGAGATGGTTCTGGAAGGTGGAGCATTGGTGCTAGCAGATATGGGCATATGTGCTATTGATGAATTTGACAAGATGGATGAATCGGATCGTACAGCTATACATGAAGTTATGGAACAACAGACCGTTAGCATTGCCAAGGCTGGGATCACTACATCCCTGAATGCGAGGACTGCTGTCCTTGCTGCTGCTAATCCAGCATGGGGAAGATATGATCTAAGAAGAACTCCAGCTGAAAATATTAATCTTCCTCATGCCCTCCTATCAAGGTTTGATCTTCTGTGGTTAATCCTTGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGGCATGTTGTATATGTTCATCAAAAGAAGGAGTCTCCCGCCCTAGGATTCACTCCTCTTGAACCATCTGTTCTACGTGCATACATATCAGCTGCAAGAAGAATTTCTCCTAGTGTCCCGAGGGAACTGGAAGAGTATATTGCTAGTGCATACTCCAGCATTCGTCAAGAAGAAGCAAGGTCCAATGCTCCTCATTCCTACACAACTGTCAGAACATTGCTCAGTATTCTCCGCATATCAGCTGCTCTAGCAAGACTCCGTTTTTCTGAAACTGTTGCTCAGAGTGATGTGGACGAAGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTGTACTCTGATGACCGTCACAAATCTGGTCTGGATGCTATATCTGATATTTATTCCGTACTGCGAGATGAAGCAGCTAGAGGTAACAGAATGGATGTCAGCTATGCCCATGCACTGAACTGGATATCTAGGAAGGGATACAGCGAAGCCCAGTTAAAAGAGTGTTTGGAGGAGTATGCAGCATTAAATGTATGGCAGATACATCCTCACACCTTTGATATACGATTTATTGATGCTTGA 2163 0.4346 MSTKDLNFDADKALAKEFLSSFADANGEAKYMNILQDVANHKTRAVQIDLEDLINYKDLDEEFLRRVTENTRRYIGIFSNAIDELMPESTEAFTDDDHDILMTQRSDEGPEGTDGFDPLQKMPPEIKRYYEVYIKASSKGRPFTIREVKASNIGQLVRISGIVTRCSDVKPLMKVAVYTCEDCGFEIYQEVTARVFMPLFECPSKRCDTNRRKGNVILQLRASKFLRFQEAKIQELSEHVPKGHIPRTMTVHLRGELTRKVSPGDVVELSGIFLPIAYSGFRAVRAGLVADTYLEAMSVTHFKKKYEDYELLGDEEEQIARLAEDGDIYNKLARSLAPEIFGHDDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPHALLSRFDLLWLILDRADMDNDLEMARHVVYVHQKKESPALGFTPLEPSVLRAYISAARRISPSVPRELEEYIASAYSSIRQEEARSNAPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRHKSGLDAISDIYSVLRDEAARGNRMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02777 720 Gene3D - 313 645 IPR027417 -
Cca03g02777 720 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cca03g02777 720 SMART AAA_5 370 523 IPR003593 -
Cca03g02777 720 Gene3D - 11 103 - -
Cca03g02777 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca03g02777 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca03g02777 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca03g02777 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca03g02777 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca03g02777 720 CDD MCM7 331 638 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cca03g02777 720 Pfam MCM AAA-lid domain 555 638 IPR041562 -
Cca03g02777 720 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 38 698 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cca03g02777 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 650 IPR027417 -
Cca03g02777 720 SUPERFAMILY Nucleic acid-binding proteins 15 296 IPR012340 -
Cca03g02777 720 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca03g02777 720 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca03g02777 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 122 134 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cca03g02777 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 160 171 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cca03g02777 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 178 189 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cca03g02777 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 195 207 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cca03g02777 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 287 297 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cca03g02777 720 SMART mcm 141 640 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cca03g02777 720 Gene3D - 145 273 IPR012340 -
Cca03g02777 720 Gene3D - 172 226 - -
Cca03g02777 720 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 38 698 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cca03g02777 720 Pfam MCM N-terminal domain 15 134 IPR027925 -
Cca03g02777 720 Pfam MCM OB domain 145 274 IPR033762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02777 Cca-Chr3 49146483 49151955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02777 4 718 Core DNA Replication Machinery Family AT4G02060 84.476 0.0 1264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02777 K02210 - gmx:100802903 1342.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02777 03 49146483 49151955 Cca03g02777 03 49146483 49151955 ECH