Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02773 ATGGCTTCGATCCAACGCTCTGCGAGTTCCGGATCCGAAGGCGGAGATCCGCAAATCGACGAGAGGAAGCGGAAGAGGATGCTGTCGAACCGTGAATCCGCGCGCCGCTCGCGGATGAGGAAGCAGAAGCAGTTGGAGGATCTGACCGATGAGATTAGCGGATTGCGAGGCGCGAACAAGAAGCTCGCGGAGAACATAAAGGCCAAGGAAGAAGCATGCGTTGAGACCGAAGCTGCGAACAGCATTCTGAGGGCTCAGACGATGGAACTGGCCGATCGATTGCGCTTCTTGAACTCGATCCTTGAGATCGCTGAAGAGGTCGGCGGTTTATCCGTTGAGATTCCTGAGATTCCAGATCCTCTGCTTCGGCCGTGGCAGATTCCGCACCCGGATCCGTTTTATTCTTACAGTATCAGTTCCGAAGAAAAAAAAAAAAAAACTGGATTCTGA 450 0.5311 MASIQRSASSGSEGGDPQIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEISGLRGANKKLAENIKAKEEACVETEAANSILRAQTMELADRLRFLNSILEIAEEVGGLSVEIPEIPDPLLRPWQIPHPDPFYSYSISSEEKKKKTGF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02773 149 Pfam bZIP transcription factor 22 73 IPR004827 GO:0003700|GO:0006355
Cca03g02773 149 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 130 - -
Cca03g02773 149 SUPERFAMILY Leucine zipper domain 22 70 IPR046347 GO:0003700|GO:0006355
Cca03g02773 149 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 20 67 IPR004827 GO:0003700|GO:0006355
Cca03g02773 149 MobiDBLite consensus disorder prediction 16 49 - -
Cca03g02773 149 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 25 40 IPR004827 GO:0003700|GO:0006355
Cca03g02773 149 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 130 - -
Cca03g02773 149 MobiDBLite consensus disorder prediction 1 49 - -
Cca03g02773 149 CDD bZIP_plant_GBF1 23 73 IPR045314 GO:0003700|GO:0006355
Cca03g02773 149 Gene3D - 20 77 - -
Cca03g02773 149 SMART brlzneu 18 82 IPR004827 GO:0003700|GO:0006355
Cca03g02773 149 Coils Coil 31 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02773 Cca-Chr3 49100101 49100550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02773 1 130 bZIP Transcription Factor Family AT3G62420 52.239 1.55e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca03g02773 bZIP_1 7.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02773 K25786 - gmx:778144 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02773 03 49100101 49100550 Cca03g02773 03 49100101 49100550 ECH
Cca02g01281 02 30950264 30951730 Cca03g02773 03 49100101 49100550 ECH
Cca03g02773 03 49100101 49100550 Cca02g01281 02 30950264 30951730 PCT