Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g02772 | ATGGCTTCGATCCAACGCTCTGCGAGTTCCGGATCCGAAGGCGGAGATCCGCAAATCGACGAGAGGAAGCGGAAGAGGATGCTGTCGAACCGTGAATCCGCGCGCCGCTCGCGGATGAGGAAGCAGAAGCAGTTGGAGGATCTGACCGATGAGATTAGCGGATTGCGAGGCGCGAACAAGAAGCTCGCGGAGAACATAAAGGCCAAGGAAGAAGCATGCGTTGAGACCGAAGCTGCGAACAGCATTCTGAGGGCTCAGACGATGGAACTGGCCGATCGATTGCGCTTCTTGAACTCGATCCTTGAGATCGCTGAAGAGGTCGGCGGTTTATCCGTTGAGATTCCTGAGATTCCAGATCCTCTGCTTCGGCCGTGGCAGATTCCGCACCCGACGCAACCGATTATGGCCACCGCGAACATGATTCTGCGTTGA | 432 | 0.5625 | MASIQRSASSGSEGGDPQIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEISGLRGANKKLAENIKAKEEACVETEAANSILRAQTMELADRLRFLNSILEIAEEVGGLSVEIPEIPDPLLRPWQIPHPTQPIMATANMILR | 143 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g02772 | 143 | PANTHER | BZIP TRANSCRIPTION FACTOR 44 | 1 | 141 | - | - | |
| Cca03g02772 | 143 | MobiDBLite | consensus disorder prediction | 16 | 48 | - | - | |
| Cca03g02772 | 143 | Gene3D | - | 20 | 77 | - | - | |
| Cca03g02772 | 143 | Pfam | bZIP transcription factor | 22 | 73 | IPR004827 | GO:0003700|GO:0006355 | |
| Cca03g02772 | 143 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 20 | 67 | IPR004827 | GO:0003700|GO:0006355 | |
| Cca03g02772 | 143 | PANTHER | BZIP TRANSCRIPTION FACTOR 53 | 1 | 141 | - | - | |
| Cca03g02772 | 143 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 25 | 40 | IPR004827 | GO:0003700|GO:0006355 | |
| Cca03g02772 | 143 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Cca03g02772 | 143 | CDD | bZIP_plant_GBF1 | 23 | 73 | IPR045314 | GO:0003700|GO:0006355 | |
| Cca03g02772 | 143 | SUPERFAMILY | Leucine zipper domain | 22 | 70 | IPR046347 | GO:0003700|GO:0006355 | |
| Cca03g02772 | 143 | SMART | brlzneu | 18 | 82 | IPR004827 | GO:0003700|GO:0006355 | |
| Cca03g02772 | 143 | Coils | Coil | 31 | 79 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g02772 | Cca-Chr3 | 49098761 | 49099944 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca03g02772 | 1 | 141 | bZIP Transcription Factor Family | AT3G62420 | 52.414 | 2.12e-47 | 148 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bZIP | Cca03g02772 | bZIP_1 | 6e-11 | CL0018 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g02772 | K25786 | - | gmx:778144 | 242.276 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca03g02772 | 03 | 49098761 | 49099944 | Cca03g02772 | 03 | 49098761 | 49099944 | ECH |