Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02766 ATGGCCTCCAAAACTTCTCGCTCTACCTCCAAACATCAGAAACAACATGGAGAGGTGACCAAAGATGATGCCATGACGAAGAAGATAAATCAATTCACAGATCAAATACATGCAGAGCGAGGAGAATGCGTTAAAGAAAAAATTCAGAGACATTGGAAGAATCTTGAGCCTTTGTTTTCAACGATTGAGTCAGTAATATCAGGGAGGGAGTCTTTACAGACAGAGAAAAATGTTAATATGCTTTCTTCAAAAATTGTCAACCCTTTGGGTAAGTTCAGTGGTTTCTCTAAAGGTATGGTAGAGAAGGATCGCATCAACAATGTGGACTTATCATGTGCAAAAGGCATTAAGATTTCACACATGGAAAAAATTCCACCATATATATCTTGGGTATATGTGGCCAGAAATGAGAGAATGGCCAAAGATCAGTCAGTTATTGGAAAATTCCAAATGTACTATGATAAAAATAGAGGTGAAATGGTGATATGCAGTGATAGTGAAGAAGAGATAGAGGAAGTTAAACATGACTTCACAGAGGCTGAAGACCAAATTTTGCGGATGACACTTGAGGAATACGAGTCTACTGGAGAGGTACCGAATATCGTTAAAGAGTCTATTAAAACTACCGATTCACAAATTAAGGAGAGGTATGGAATACTCAAGGAAAAGAATACGCGAAGTCTAGATCAGAAATCTGGAGCTTGTGATTGCAGAGGATGTGCATCTCATCTTGGAATATGTTTGGAGAAAAACTTGAGTGATACTTTAGAAACTTTCGATATCCTCTTCTGTCGTCAGTGCTATATATTTGATTGTCCCCTGCATGGCACTTCTCAACGTTTAATATATCCTAGTGAAAAGCAACCAATTTGGTCTGAACCTGAAGATGATACGAAACCATGCAGTGATCAGTGTTACCTTCTGGATAAAGGAGTTGTGGATGGACAAAAAGATCTGACAAATGAGAGAGAATTTAATCAGAAGTCCAATTCCATGGAAATGCAAGTTGATGAGATGACAAGTAACTCGGATTGGAAACCTCTCGAGAGAGATTTATATTTGAAAGGACTAGAACTGTTTGGAAAAAATAGTTGCCTTATAGCACGTATCTTGCTTTCTGACTTAAAGACTTGTTTGGAAGTAGCCAAGTACATGTTTGCTGGTGGAGAGTCAATGCCCCATGGATCCATTCCAAGTTCAATGACCGACACAAATGAAAAGATTAATGCAGAGTGCACAGACCAAGAAATGTCATCAAAACAGCCCCAACGAAAAAAGGGGAAAGCAAGAAAGTTCAATTATCATCGAAAGTCTGCTGGCCTCCCACCTAGATTGAGAAGAATTGGTTACGAGGAAGATCTGTGTAATAAGCAGTATACTCCTTGTGAGTGTCATGGAATGTGCGGAAAGGAATGTCCTTGTCTTCTTAATGGAACTTGCTGTGAAAAATATTGTGGGTGTTTAAAGCTTTGCAATAATCGGTTCAGAGGATGTTATTGTGCTAAGAGTCAATGCAAAAGTCGATTATGTCCATGCTTTGCAGCCAACCGCGAATGTGACCCAGATGTCTGTCGAAATTGTTGGGTTAGTTGTGGCGATGGTTCACTGGGGGAGCCACCTCGATGTGGAGATGGTCAATGTGAAAATATGAATCTTCTTTTAGGCAAAAAACAAAGGATTCTTTTGGCAAAGTCAAATGTTGCAGGATGGGGAGCCTTCACAAAGAACTCGATAAACAAAAATGATTGCTTAGGGGAGTACACCGGTGAACTAATTACTCAAGCAGAAGCAAACAAGCGTGGAAAATTGTATAATCGAATAGAAACTTCATTCCTTTTTAACCTTAATGATCAATGGGTTATTGATGCTTATCGCTTAGGAGATAAGTTAAAATTTGCAAACCACTCATCAAAACCCAACTGCTATGCAAAGGTGATGATGGTAGGAGGGGATCATCGAGTTGGCATATTTGCTAAAGAGAACATTGAAGCCGGTGGTGAACTTTTTTATGATTATTACTATGCTTTAGATTGTGCACCAGCCTGGGCTCTTCCGTCGAAAGTTGAAGCTTCCAAAAAAGATGAATTAACAACTTCTCGAGGCAAGACAAAGAAATATCATACTCGATGA 2130 0.3925 MASKTSRSTSKHQKQHGEVTKDDAMTKKINQFTDQIHAERGECVKEKIQRHWKNLEPLFSTIESVISGRESLQTEKNVNMLSSKIVNPLGKFSGFSKGMVEKDRINNVDLSCAKGIKISHMEKIPPYISWVYVARNERMAKDQSVIGKFQMYYDKNRGEMVICSDSEEEIEEVKHDFTEAEDQILRMTLEEYESTGEVPNIVKESIKTTDSQIKERYGILKEKNTRSLDQKSGACDCRGCASHLGICLEKNLSDTLETFDILFCRQCYIFDCPLHGTSQRLIYPSEKQPIWSEPEDDTKPCSDQCYLLDKGVVDGQKDLTNEREFNQKSNSMEMQVDEMTSNSDWKPLERDLYLKGLELFGKNSCLIARILLSDLKTCLEVAKYMFAGGESMPHGSIPSSMTDTNEKINAECTDQEMSSKQPQRKKGKARKFNYHRKSAGLPPRLRRIGYEEDLCNKQYTPCECHGMCGKECPCLLNGTCCEKYCGCLKLCNNRFRGCYCAKSQCKSRLCPCFAANRECDPDVCRNCWVSCGDGSLGEPPRCGDGQCENMNLLLGKKQRILLAKSNVAGWGAFTKNSINKNDCLGEYTGELITQAEANKRGKLYNRIETSFLFNLNDQWVIDAYRLGDKLKFANHSSKPNCYAKVMMVGGDHRVGIFAKENIEAGGELFYDYYYALDCAPAWALPSKVEASKKDELTTSRGKTKKYHTR 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02766 709 CDD SET_EZH 558 674 - -
Cca03g02766 709 ProSiteProfiles SET domain profile. 558 673 IPR001214 GO:0005515
Cca03g02766 709 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 709 IPR025778 GO:0031519
Cca03g02766 709 SUPERFAMILY SET domain 454 674 IPR046341 -
Cca03g02766 709 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 19 329 - -
Cca03g02766 709 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 323 706 - -
Cca03g02766 709 SMART CXC_2 493 530 IPR033467 -
Cca03g02766 709 Gene3D SET domain 459 674 IPR046341 -
Cca03g02766 709 Coils Coil 163 190 - -
Cca03g02766 709 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 19 329 IPR045318 GO:0006338|GO:0018024
Cca03g02766 709 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 323 706 IPR045318 GO:0006338|GO:0018024
Cca03g02766 709 Pfam CXC domain 497 528 IPR041355 -
Cca03g02766 709 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g02766 709 MobiDBLite consensus disorder prediction 11 26 - -
Cca03g02766 709 ProSiteProfiles CXC domain profile. 445 544 IPR026489 -
Cca03g02766 709 SMART set_7 558 679 IPR001214 GO:0005515
Cca03g02766 709 Pfam SET domain 569 672 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02766 Cca-Chr3 49047075 49056437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02766 547 672 C2H2 Transcription Factor Family AT2G23740 29.371 3.29e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca03g02766 SET 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02766 - K11430 gmx:100819982 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02766 03 49047075 49056437 Cca03g02766 03 49047075 49056437 ECH
Cca03g02766 03 49047075 49056437 Cca02g01287 02 30981359 30989095 PCT