Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02765 ATGGAATTTGACCAATTTTCTTCCCCAGCTTTGAACTTCAAAGGAATCCAGGTGGGTTACGAGTCTATACAAGAGGATGCGTTCCAAGGGAACGAGAGCTTCTCTGGAATGGAATTGCTGGGAGAGATTGAGTCTCTCCCTCATGAGAATGGAAAAGGAGACAAATTATTCAAAGATCAAAATCTTAAACAGATACAAGAATCCCAAGTTGATAACTCGGTGTTAGAAGAGATCAACTTTGACTCTGGTATGAAAATGCAAGAAACACAACTATTTCATGAAATTACAGGGATAAAAAAACACGGTGTGGCAATATCAGAATCAGTTGAATACAATAAGCAGCTGCCACCAACATTGGCATCCCTAGAGCTTCTGAGAAATTACGGAAGCAGGTTCAAGGGGCTAGGCGAGCAAAATACAAGCACCTTAAGCAATATTGAAACTTCTTTGGATCATCAGATGATGTCAACTGAAGAAATAATAAGAGTGGCTGGAGCAAGGTATGTCCAATATTCTGCACATTGGAATGATAGTTTTTGCATCCCTATGCACCCATACGGATTGGACCTTGGTGGTTTGTCCGAGGAAGAAAATAGAGATGTAGAACTTGCTCAGTTTCTCCTTGGTGCAGCTGAGAGGGTAGGTTGCCAACAATTTGAACGTGCAAACAGGTTACTTCTCCATTGCCAATGGAATGCATCTGCCAGTGCAACCCCTGTTCAAAGAGTTATCTTTCATTTCGCTCGAGCACTTCGAGAGAGAATTGACAAAGAAATAGGAAGGATCACGGTAAATGGATCAGAGAAAAATGAAGAAAGGGAGTTACTTCAGAAGATGGACACCAATGTTGCCCTCACATGCCATCAAAAAATTCCTTTCAATCAAGTAATGCAACTTACCGGGATACAAGCTATAGTGGAACATGTTGCACGTGAGACCAAAATCCATCTTTTAGACCTTGAAATAAAACGTGGGGTGCATTGCATAGCTTTGATGCAAGCGCTGACGGAGCGCCAGGATTGCACAGTGAAACTTTTGAAGATAACTGCCATTGGACTTAATGAATGCAAAACCAAGATAGAAGAGACTTGCAAAAGATTAGCTAGTTTTGCTGAATCCTTGAACTTACCCTTTTCATATAAGACAGTTTTTGTGAATGACATGGAAGAAATAAGGGACGATCATTTTGAAATTGAAGAGGATGAAGCTGTGGCTGTGTACTCTCCATATTTTCTAAGGTGCATGGTAGCAAGGCCATATTGCATGGAAAACCTGATGAGGGTTATAAGAAATATCAAACCAGTTATAATGATAGTCCTTGAAGTAGAAGCAAACCATAATTCACCCTCCTTTGTGACTCGCTTCATTGAGGCATTGTTCTTCTACTCAGCTTTTTTTGATTGCCTTGAAACCTGCATAAAACATGAGATTGAGAGCAGAATGACAATCGAAGAAGTGTTATCTGAAGGGATACGAAACATTGTTGCAATGGAAGGAAGGGAAAGGACAGTGAGAAATGTGAAGATAAATGTTTGGAGAAGGTTCTTTGCAAGGTACCGAATGGTGGAAACCGGGTTTAGTGAGTCATCTATGTACCAAGCTGAATTGGTGGCCAAAGAGTTTGCTTTTGGGAAATTCTGCACTATAGACAAGAATGGTAAGTGTCTTATAGTTGGATGGAAGGGGACCCCAATGCATTCAATCTCAGCTTGGAGGTTTCTTTGA 1725 0.4075 MEFDQFSSPALNFKGIQVGYESIQEDAFQGNESFSGMELLGEIESLPHENGKGDKLFKDQNLKQIQESQVDNSVLEEINFDSGMKMQETQLFHEITGIKKHGVAISESVEYNKQLPPTLASLELLRNYGSRFKGLGEQNTSTLSNIETSLDHQMMSTEEIIRVAGARYVQYSAHWNDSFCIPMHPYGLDLGGLSEEENRDVELAQFLLGAAERVGCQQFERANRLLLHCQWNASASATPVQRVIFHFARALRERIDKEIGRITVNGSEKNEERELLQKMDTNVALTCHQKIPFNQVMQLTGIQAIVEHVARETKIHLLDLEIKRGVHCIALMQALTERQDCTVKLLKITAIGLNECKTKIEETCKRLASFAESLNLPFSYKTVFVNDMEEIRDDHFEIEEDEAVAVYSPYFLRCMVARPYCMENLMRVIRNIKPVIMIVLEVEANHNSPSFVTRFIEALFFYSAFFDCLETCIKHEIESRMTIEEVLSEGIRNIVAMEGRERTVRNVKINVWRRFFARYRMVETGFSESSMYQAELVAKEFAFGKFCTIDKNGKCLIVGWKGTPMHSISAWRFL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02765 574 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 52 572 - -
Cca03g02765 574 ProSiteProfiles GRAS family profile. 194 572 IPR005202 -
Cca03g02765 574 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 52 572 IPR005202 -
Cca03g02765 574 Pfam GRAS domain family 204 572 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02765 Cca-Chr3 49038019 49040126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02765 201 573 GRAS Transcription Factor Family AT1G66350 29.679 1.24e-48 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca03g02765 GRAS 1.5e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02765 - - gmx:100791952 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02765 03 49038019 49040126 Cca03g02765 03 49038019 49040126 ECH