Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02763 ATGGACAGTAATACTAAAGCCTCCCCCCAACCTGACTCAGAATCTCAAACATCAAAGAAAAGGAAAATGGTTGAGAAAACAGTTGTGGCAGTGAGGATAGGAGAGAATGTTGGCAAGCTGAAAAATGAAGGGCTACCCTCAGATTTTTGGTCTTGGAGGAAATATGGACAAAAGCCAATTAAAGGGTCTCCATATCCAAGGGGCTATTACAAGTGCAGCACATCCAAAGGTTGTTCAGCCAAAAAACAAGTAGAGAGATGCAGAACAGATGCTTCAATGCTCATCATCACATATACCTCTACACATAACCATCCATGTCCCACTACCACAAATTCACCTCAACAACCAAAAGAATCTGAATCAAAGACCATCCAAGATGTCTCACCTACCCCAAAGGAGGAAGACCAAGAAAAAATAGAAGAGCAAGAGAATAATAACAAGACAAATGATGAAATCACAAATGAAGAAACTTTTCAATACTTGCAATCTCCAATACGATGCTCTCAAGACATCATCATAGAACAAGAAGACCCTTTCAAACTGAACACGGAGAAAAGCCATGACAGAATGGATCTCCTCTTGGAGGAAGAGCCCCTTTGTTATGCACAATTCAAGAACTTGTCTGCTTCCAAAAACGAAGAACTTGATTTCTTCGATGAGCTTGAGGAGTTGCCCATGTCTTCTTCTTTCTTGCACTTTACGAGGAGCATTTTTTCCGATGAAAGGATTCCCGTTGCCCCTTCTTGA 747 0.411 MDSNTKASPQPDSESQTSKKRKMVEKTVVAVRIGENVGKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPCPTTTNSPQQPKESESKTIQDVSPTPKEEDQEKIEEQENNNKTNDEITNEETFQYLQSPIRCSQDIIIEQEDPFKLNTEKSHDRMDLLLEEEPLCYAQFKNLSASKNEELDFFDELEELPMSSSFLHFTRSIFSDERIPVAPS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02763 248 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g02763 248 SMART WRKY_cls 46 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02763 248 PANTHER WRKY TRANSCRIPTION FACTOR 69-RELATED 12 233 - -
Cca03g02763 248 MobiDBLite consensus disorder prediction 100 126 - -
Cca03g02763 248 MobiDBLite consensus disorder prediction 127 150 - -
Cca03g02763 248 MobiDBLite consensus disorder prediction 100 153 - -
Cca03g02763 248 Coils Coil 132 152 - -
Cca03g02763 248 Gene3D WRKY domain 33 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02763 248 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 233 IPR044810 GO:0003700
Cca03g02763 248 SUPERFAMILY WRKY DNA-binding domain 44 107 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02763 248 Pfam WRKY DNA -binding domain 48 105 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02763 248 ProSiteProfiles WRKY domain profile. 41 107 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02763 Cca-Chr3 49028250 49029686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02763 13 230 WRKY Transcription Factor Family AT4G01250 38.532 1.06e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g02763 WRKY 3.9e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02763 03 49028250 49029686 Cca03g02763 03 49028250 49029686 ECH