Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02757 ATGTCGAAGAGGAAATTCGGATTCGAAGGCTTCGGCATAAACCGCCAATCCACCTACAGCTTCGAGCGATCTCAACCCCCTCAGCGACTCTACGTCCCTCCCTCCTCGCGccacggccacgacaactacgaggacaccgacctcgacaacatcgactacgacgacaacaacaacgaAGAGGGGAACAAGAGCAGCGCAGCCGACAACGATGACGGTGAAATCGACCCCCTCGACGCCTTCATGGAGGGCATTCACGAGGAGATGCGGGCGGCGCCACCGCCCAAGCCCAAGGAGAAGGCGGAGGACCGATACCGcgacgacgacgacgacgacCCCATGGAGAGCTTTTTGAAAGCGAAGAAGGATTTAGGGTTGACCCTCGCCTCGGAGGCGCTGCACGCTGGGTACGATTCCGATGAGGAGGTTTATGCTGCTGCCAAAGCTGTTGACGCTGGTATGATTGAGTATGATTCCGATGATAATCCTATTGTTATTGACAAGAAGAAAATTGAACCCATTCCTGCCCTCGATCACTCTTCCATCGATTACGAGCCCTTCAATAAGGATTTCTACGAGGAGACACCTTCTATATCAGGTATGAGTGAGCAGGATGTAAGTGAATACAGGAAGAGTTTGGCTATTCGTGTATCCGGTTTTGATGTTCCTAAGCCAATAAAGGCATTTGAGGACTGTGGTTTTCCTTCTCAGATTATGAATGCTATTAAAAAGCAGGGGTATGAGAAGCCCACGTCTATACAATGTCAAGCTTTGCCAGTTGTGCTTTCTGGCAGGGATATCATTGGTATAGCAAAAACTGGTTCTGGTAAGACTGCTGCTTTTGTGCTTCCTATGATTGTGCACATCATGGATCAGCCTGAGCTTCAGAAGGAGGAGGGGCCCATAGGGGTCATATGTGCACCTACCAGAGAGTTGGCACATCAGATATATCTGGAGGCAAAGAAATTTGCAAAAGCATATGGAGTGCGTGTCTCTGCTGTTTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCGGGATGTGAGATAGTTGTTGCTACCCCTGGCAGACTGATAGACATGTTAAAAATGAAGGCATTGACGATGATGAGAGCAACTTACCTGGTGCTTGACGAAGCTGATAGGATGTTTGATCTTGGATTTGAGCCGCAAGTAAGGTCCATTGTGGGGCAGATTAGGCCGGACCGCCAAACTTTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAGATCCTTTCTGATCCTATTAGAGTAACTGTTGGGGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCTTCCGATGCTGAGAAATTGCCTTGGCTTCTAGAAAAGTTGCCTGAAATGATTGATCAAGGTGATACCCTAGTGTTTGCTTCCAAAAAGGCTACAGTGGATGAAATTGAATCACAATTGGCTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCTTCTACCATGTGCTCATTGCAACTGATGTTGCTGCCCGTGGTCTTGACATCAAGTCAATTAAGTCAGTTGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGAAGGACAGGCCGTGCTGGTGACAAGGATGGAGTTGCATACACTCTCATAACTCAGAAAGAAGCACGGTTTGCTGGAGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCAGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAGGGCAGAGGTAGAGGTGGTGGCGGGGGTGGCCGAGGTGTGCGTGGTGTGGATTTTGGCTTGGGCATTGGATATAATCCTGAATCAAATAACGCACCATCTAACACAGTTCCTAGTCGATCTGCTGCTGTAAATTCTCTGCGAACAGGAATTATGTCGCAATTTCGAAGTAACTTTGTTGCTGCTTCATCAAACTCTCAGAGTCAAGGATTAGGTAACAATACAAGCATGGCTGCAAATAAGAGACCTGCACTCCCTGGTTTCGTATCTGGTGGGTCAATTGGTGGTGACATAAATACTTATCAGCATACTGCTTCACCCAGTCCTGCTACATCAGCAGTAAATTCCACCAGTCAAAGTTCCGGAGTAAATCCTGGTCAGAACAGCACGAACAGTTCTAAACCCAAAGAAAGGAGGAGGCCATCAGGATGGGATAGATAG 2313 0.4483 MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNNNEEGNKSSAADNDDGEIDPLDAFMEGIHEEMRAAPPPKPKEKAEDRYRDDDDDDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGFYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNTVPSRSAAVNSLRTGIMSQFRSNFVAASSNSQSQGLGNNTSMAANKRPALPGFVSGGSIGGDINTYQHTASPSPATSAVNSTSQSSGVNPGQNSTNSSKPKERRRPSGWDR 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02757 770 CDD SF2_C_DEAD 444 576 - -
Cca03g02757 770 MobiDBLite consensus disorder prediction 1 111 - -
Cca03g02757 770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 257 432 IPR014001 -
Cca03g02757 770 Pfam DEAD/DEAH box helicase 250 421 IPR011545 GO:0003676|GO:0005524
Cca03g02757 770 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 226 254 IPR014014 GO:0003724
Cca03g02757 770 SMART helicmild6 485 566 IPR001650 -
Cca03g02757 770 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 654 - -
Cca03g02757 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 435 IPR027417 -
Cca03g02757 770 MobiDBLite consensus disorder prediction 688 704 - -
Cca03g02757 770 MobiDBLite consensus disorder prediction 56 70 - -
Cca03g02757 770 Pfam Helicase conserved C-terminal domain 461 566 IPR001650 -
Cca03g02757 770 MobiDBLite consensus disorder prediction 13 31 - -
Cca03g02757 770 Gene3D - 189 433 IPR027417 -
Cca03g02757 770 MobiDBLite consensus disorder prediction 78 111 - -
Cca03g02757 770 MobiDBLite consensus disorder prediction 719 756 - -
Cca03g02757 770 CDD DEADc_DDX42 237 433 - -
Cca03g02757 770 MobiDBLite consensus disorder prediction 688 770 - -
Cca03g02757 770 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 378 386 IPR000629 -
Cca03g02757 770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 457 606 IPR001650 -
Cca03g02757 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 601 IPR027417 -
Cca03g02757 770 Gene3D - 434 610 IPR027417 -
Cca03g02757 770 MobiDBLite consensus disorder prediction 613 638 - -
Cca03g02757 770 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 654 - -
Cca03g02757 770 SMART ultradead3 245 447 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02757 Cca-Chr3 48988479 48992888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02757 226 582 Eukaryotic Initiation Factors Gene Family AT3G13920 35.556 8.38e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02757 K12835 - gmx:100814854 1350.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02757 03 48988479 48992888 Cca03g02757 03 48988479 48992888 ECH