Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02753 ATGGAGACTAAGGACTATGCCATGGGAGCTTGTAACTATCCATTCTTTGATTTCTCCTCTGAAGATAAGAGCTCTTTAGGGTTTATGGAGTTGTTGGGTGTGCAAGATTATAGTCCTCTGCTTGATTTGCCTTCCTCGTCAGATATGTTAGTCCCACCTCAGACTAAGAAAGATTCTTCCGAGGTAACCAACCAGCAACCTGCGACTCCCAACTCTTCCTCCATTTCATCGGCGTCCAGCGAGGCGGTTCATGATGAACAGAATAAAACTGTGGATCAAGCTCATCAACATCAGAAGACCAAGGAACAGTTGAAGGCAAAGAAGACAAATCAGAAGAGACAGAgagagccgagattcgcgttcatgacgaaaagcgaggtggatcatctggaagatgggtacagatggagaaagtacggtcaaaaagctgtgaaaaacagcccctttccaaggagctactatcgttgcaccagtgcttcgtgtaatgtgaagaaacgcgtggagcggtctttcactgatccaagcattgtggtgacgacctacgaaggccaacacacacatccAAGCCCAGTTATGGGTCGCTCGGGAGTCTCCAACTTTGGTTCGGTAATGTCTGGATCTGGAAACTACATGTCTCAATACTATCAACAGCAAGTCAACATCAGTGCATTGTCTTCTTTGGGTTTCCTTTCTTCTTCGTCTTCAAAGAATTCCACTTTGACTCAAGAGAGACCGCTTTGCTACAGTCCAGGGGCGACTGCGTTGTTAAGTGACCATGGCCTTCTGCAAGACGTTGTTCCTTCCCATATGTTAAAAGAAGAGTAG 825 0.3297 METKDYAMGACNYPFFDFSSEDKSSLGFMELLGVQDYSPLLDLPSSSDMLVPPQTKKDSSEVTNQQPATPNSSSISSASSEAVHDEQNKTVDQAHQHQKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSIVVTTYEGQHTHPSPVMGRSGVSNFGSVMSGSGNYMSQYYQQQVNISALSSLGFLSSSSSKNSTLTQERPLCYSPGATALLSDHGLLQDVVPSHMLKEE 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02753 274 Pfam WRKY DNA -binding domain 131 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02753 274 SUPERFAMILY WRKY DNA-binding domain 122 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02753 274 SMART WRKY_cls 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02753 274 PANTHER WRKY TRANSCRIPTION FACTOR 15 266 - -
Cca03g02753 274 MobiDBLite consensus disorder prediction 42 118 - -
Cca03g02753 274 PIRSF WRKY_txn_fact_IIc 2 274 IPR017396 GO:0003700
Cca03g02753 274 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 266 IPR044810 GO:0003700
Cca03g02753 274 ProSiteProfiles WRKY domain profile. 125 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02753 274 Coils Coil 94 114 - -
Cca03g02753 274 MobiDBLite consensus disorder prediction 85 118 - -
Cca03g02753 274 MobiDBLite consensus disorder prediction 48 84 - -
Cca03g02753 274 Gene3D WRKY domain 115 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02753 Cca-Chr3 48902470 48903971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02753 1 274 WRKY Transcription Factor Family AT2G47260 46.313 2.77e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g02753 WRKY 7.2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02753 - - gmx:732590 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02753 03 48902470 48903971 Cca03g02753 03 48902470 48903971 ECH
Cca03g02753 03 48902470 48903971 Cca02g01300 02 31158624 31160580 PCT