Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02752 ATGGAGAATCCGATGGAGCAGGTAGAGCCAAGGGTCAATTTCAGCGCCGGAGACCCTCCAAACCCTCACACTCACGACAACGGCAACAGCTTCCACCACTTCCAACCACCACCCGCTGGCGATTCTGGATACGCTCTCAACCATTCCATGCCTCGCCCTCCCCGCAAACGCCCTTGGCATCACTCCAACCAAGGAACTTCTCCCCCAGATCCAGTGGACGGTGTGTGCCATGTGAAAGTTTATGTTGCACCTGTTCCAAGAACGGCATCGGAGGCTGATATTCGCCTCGTATTTGAAGTACATGGAACTATTGTTGAGGTTGTTCTTTTAAAAGATAAGAGAACTGGTGTACGGCAAGGAAGTTGTTTTGTTAAATACGCAACATTAGATGAAGCTGACAGGGCTATTAAAGCTTTAAGCAATCAATATACATTTCCTGGGGAATCATGTCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGGCTTGGGGTTCTACGTAACATGGAAAAGAAAGATCATTTAGAAGAGGTGGTTGATAAAGTTTTTGTTAGTTCCTTCAACAAAGAAGCTACAGAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGTTATGTAGAAGATATCTTCTTGGCGCAGAATCGTGGATATGCTTTTGTAAAATTTTCTAACAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCCAGGATTAGAGATTCAAGGGGCAACTTTTTATCTGTGAATGCAAATTTTGGTCCTTGTTCTCAAGAACCAGCCGTATGGCCACTGCCAAATTTTGGTGATTCCAGTGGTGGAGGAAATATTATGAATGTTGCCCCGCATCATTCCACAATTGCACACCCACAAGTTACTTCTCGTATGCAAAACTGGGAACCTGGTGCTACTGTGGTACAACAGCCATATCCTCCCCAACAAGTGCATTCACAGTTGGCTTCAATGACTTTGGGGTCATTTCAAACTCCAAAGTTGTCTTCTCAAACATTTATTACCGAGGTGCAGAGACAATCACATACTGCAGATTCATCAGTTCAAAATATAGAGCAGCATCTTAGTTCACAGCTGCCTACTCAGACTGGAAGCAACCCTCATACAGTTGCTGGCAATACCCCACCTGATATGCCTACAAGTCCAGAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCTGATGGTTTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGTTGGGAGAAGCCTGAGGAGTATGCCTTGTATGAAAAAGAATCTCAGAAGCAGCAAGAGCTGGAGGATAGTAGCTGTAGTCAGTCACAATTGTCGTTATGTTCCTCCCAACAAGTTTCTCAAAGACAACAGGAAACAAATCATGACCACCGGCAGTCAGAAACAAGTCCTGTTGTTGGATAG 1497 0.4402 MENPMEQVEPRVNFSAGDPPNPHTHDNGNSFHHFQPPPAGDSGYALNHSMPRPPRKRPWHHSNQGTSPPDPVDGVCHVKVYVAPVPRTASEADIRLVFEVHGTIVEVVLLKDKRTGVRQGSCFVKYATLDEADRAIKALSNQYTFPGESCPVVVKFADRELERLGVLRNMEKKDHLEEVVDKVFVSSFNKEATEKEIEEIFSPYGYVEDIFLAQNRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKKPRIRDSRGNFLSVNANFGPCSQEPAVWPLPNFGDSSGGGNIMNVAPHHSTIAHPQVTSRMQNWEPGATVVQQPYPPQQVHSQLASMTLGSFQTPKLSSQTFITEVQRQSHTADSSVQNIEQHLSSQLPTQTGSNPHTVAGNTPPDMPTSPEDEDFPECDWSEHYCPDGFKYYYNCVTCESSWEKPEEYALYEKESQKQQELEDSSCSQSQLSLCSSQQVSQRQQETNHDHRQSETSPVVG 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02752 498 MobiDBLite consensus disorder prediction 1 72 - -
Cca03g02752 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 256 IPR000504 GO:0003723
Cca03g02752 498 SMART ww_5 413 445 IPR001202 GO:0005515
Cca03g02752 498 CDD WW 416 445 IPR001202 GO:0005515
Cca03g02752 498 MobiDBLite consensus disorder prediction 384 402 - -
Cca03g02752 498 Gene3D - 169 263 IPR012677 -
Cca03g02752 498 ProSiteProfiles WW/rsp5/WWP domain profile. 418 445 IPR001202 GO:0005515
Cca03g02752 498 Gene3D - 402 466 - -
Cca03g02752 498 SUPERFAMILY WW domain 417 449 IPR036020 GO:0005515
Cca03g02752 498 Gene3D - 75 163 IPR012677 -
Cca03g02752 498 MobiDBLite consensus disorder prediction 475 498 - -
Cca03g02752 498 Pfam WW domain 416 443 IPR001202 GO:0005515
Cca03g02752 498 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 301 478 - -
Cca03g02752 498 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 25 283 - -
Cca03g02752 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Cca03g02752 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 241 IPR000504 GO:0003723
Cca03g02752 498 ProSitePatterns WW/rsp5/WWP domain signature. 418 443 IPR001202 GO:0005515
Cca03g02752 498 SUPERFAMILY RNA-binding domain, RBD 23 157 IPR035979 GO:0003676
Cca03g02752 498 MobiDBLite consensus disorder prediction 384 413 - -
Cca03g02752 498 SUPERFAMILY RNA-binding domain, RBD 181 265 IPR035979 GO:0003676
Cca03g02752 498 SMART rrm1_1 182 252 IPR000504 GO:0003723
Cca03g02752 498 SMART rrm1_1 79 155 IPR000504 GO:0003723
Cca03g02752 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 159 IPR000504 GO:0003723
Cca03g02752 498 PANTHER RNA BINDING PROTEIN 25 283 - -
Cca03g02752 498 PANTHER RNA BINDING PROTEIN 301 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02752 Cca-Chr3 48890609 48901195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02752 80 286 Eukaryotic Initiation Factors Gene Family AT4G34110 27.189 1.69e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02752 K13207 - gmx:100776162 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02752 03 48890609 48901195 Cca03g02752 03 48890609 48901195 ECH