Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02746 ATGTGGACCAAGGAGGAGACAGATCAACTATTTGACTTGTGTGAGAGATTTGATCTCCGATTTGTTGTAATAGCTGATAGGTTTCCATCATCTCGGACTGTAGAGGAATTGAAAGATAGATATTATAGTGTTTCCCGGGCTATATTGATTGCTAGGGCTCCATCTTCTGGGGATGTTGCAGCACATCCTCTTGTTAAGGAACCGTATAATGTTTCACAAGAAATGGAGCGAAAACGAGCATTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGAAGAGATGAAGAGGTTCTTGTTGAAGCAAAACGAATAGCTGAATCACGCATTCCTCCCAAGGTTGCTGAAGAGTCTCAGTTGGTTGCTTCTAATCCTGGTGCAGAAGCTACAGAGAGGGCTATCCCTGGTGAAACTGTATCTCCACCAAATGCGCAACTTCCATCAATGGTTACACCTACCGCATTACCAGATAATGCATCTACTCTAGCTTCTCTTCGCATGCTTCGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCTGCGAATGCTTCTGCTGGACTTAGGACTATCAAACGGGTTGAGCAAACTTTGCAAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCTACAAAAGCTGTTTGTGCTGAGCATCTTGAATTAAGAAGAGAAATACTAACTTGGCTTAATCTTCAGAAACAGGTGCAATATAAAGAGGCCGAAGGTTCCTCTTTCCGTGATGGGTCATATGGTGAAACACCTGGCACGCCAAAGCTTTTACATCGTGGTGGGGATCAGGATCGGACATTTGTTCCAGATTCAATCAATTTTGGAGCTGAAAGGGTTGGCAAAAAGGATCAAAAGCGAAAGGCACCTGGAGCTCCATCAGCTCATAAAAGACCTAGAAAACTAAAGGCCTCAGATCTTTAG 936 0.4359 MWTKEETDQLFDLCERFDLRFVVIADRFPSSRTVEELKDRYYSVSRAILIARAPSSGDVAAHPLVKEPYNVSQEMERKRALSMVLSQTRQQERRDEEVLVEAKRIAESRIPPKVAEESQLVASNPGAEATERAIPGETVSPPNAQLPSMVTPTALPDNASTLASLRMLRVYLRTYALEQMVQAANASAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRREILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKLLHRGGDQDRTFVPDSINFGAERVGKKDQKRKAPGAPSAHKRPRKLKASDL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02746 311 PANTHER BNAA04G26950D PROTEIN 1 311 - -
Cca03g02746 311 SUPERFAMILY Homeodomain-like 1 47 IPR009057 -
Cca03g02746 311 Gene3D - 1 57 - -
Cca03g02746 311 CDD SANT_DMAP1_like 2 44 - -
Cca03g02746 311 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 311 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Cca03g02746 311 MobiDBLite consensus disorder prediction 242 311 - -
Cca03g02746 311 MobiDBLite consensus disorder prediction 281 295 - -
Cca03g02746 311 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 186 248 IPR008468 GO:0005634|GO:0045892
Cca03g02746 311 Pfam SANT/Myb-like domain of DAMP1 2 48 IPR032563 -
Cca03g02746 311 SMART sant 2 47 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02746 Cca-Chr3 48845208 48850044 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g02746 DMAP1 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02746 K11324 - gmx:100818926 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02746 03 48845208 48850044 Cca03g02746 03 48845208 48850044 ECH