Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02744 ATGGAGAGGAGTTTATCAGAGAATGGTTATGGTTCTTATGGCAGTGAAGAGGAGATTTCAATAACCAAGGGTCCATGGACAGAGCAAGAGGATTCTGTTCTCTTCAATTACATAACGCTCCACGGTGAAGGTCATTGGAACTCTGTCGCTCGCTACACAGGCCTAAAACGAACGGGGAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGTCCTAACGTTCGACGTGGGAACATAACCCTCCAAGAACAGCTCTTGATTCTCGACCTTCATTCACGTTGGGGCAACCGGTGGTCGAAAATAGCGGAACACTTACCTGGTAGAACAGACAACGAGATTAAAAACTACTGGAGAACGAGGGTGGTGAAGCAGGCTAAGCAACTGAAGTGTGACGTCAACAGCAAGCAATTCAGGGACACGTTGCGCTTTGTCTGGATGCCACGTATGCTGGAGCGGATCCAGGCTCAAGCATCCTCCAACCATGCTCAAACAACCTTAAACGACACCGCTCAAGCGCACAGCGAACCTTGTGGAGCTACCAACACCGGATTGTTCTCAGAGGCGTCATCTGCAATTGAACTTCACGCGCCTTCTTTTTCTGACTCCAGCGCGTGTTACAATTTGAGATCGTGTAGTGCAGAAGAAGGTAGCAGTAGCAACCTGTATAGCTACTCGGAGATACCCGAAAATGGTTTCGGTGGCGCCGACTTGTGGACTGATGAAAATATTTATTTTCTACAACAGCAGCTAGCTGATGATTTCTGA 765 0.4784 MERSLSENGYGSYGSEEEISITKGPWTEQEDSVLFNYITLHGEGHWNSVARYTGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSNHAQTTLNDTAQAHSEPCGATNTGLFSEASSAIELHAPSFSDSSACYNLRSCSAEEGSSSNLYSYSEIPENGFGGADLWTDENIYFLQQQLADDF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02744 254 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 195 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca03g02744 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Cca03g02744 254 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Cca03g02744 254 Gene3D - 22 75 - -
Cca03g02744 254 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Cca03g02744 254 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Cca03g02744 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Cca03g02744 254 SMART sant 22 72 IPR001005 -
Cca03g02744 254 SMART sant 75 123 IPR001005 -
Cca03g02744 254 Gene3D - 80 121 - -
Cca03g02744 254 CDD SANT 80 119 IPR001005 -
Cca03g02744 254 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Cca03g02744 254 CDD SANT 25 70 IPR001005 -
Cca03g02744 254 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Cca03g02744 254 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 14 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02744 Cca-Chr3 48824463 48825647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02744 16 253 MYB Transcription Factor Family AT2G47190 50.593 7.28e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g02744 Myb_DNA-binding 9.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02744 K09422 - gmx:100819467 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02744 03 48824463 48825647 Cca03g02744 03 48824463 48825647 ECH
Cca03g02744 03 48824463 48825647 Cca02g01310 02 31336247 31337264 PCT