Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02738 ATGTTCAGAGTGAAGCATTCTCATATTTTGCCACTTGCATTCTGTATATTTTTCCTTACTTTGTTTCTTCTGGTCCAAGCTAGGCATCATTCTCATACAAAACACAAGCACTCACATTCTCATAAATCTTCTAAACCTCCAAAACAAGCACCTCCTAGCCCTCCTCACAATGAGAACCATAACAATGCCTCTTGCATTTTTGATGTAACAAAATTTGGAGCAATAGGAGACGGAAAAACAGATGACACAGAGTCTTTCAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCATCAGTTAATGTTATCCTTATACCCCAAGGTTTCTCTTTCCTCATTCACTCCACTATCTTCACTGGCCCTTGTCAAGGTGGCATGGTGTTGAAGGTTGATGGCACTCTTATGCCCCCTGATGGACCTGAATCTTGGCCAAAGAACAATAGCAGGCACCAATGGTTGGTCTTTTATAGAATCAATGGAATGTCACTGGATGGAGGTGGTTTAATAGATGGCAGAGGAGAAAAATGGTGGGACCTTCCTTGTAAGCCACACAAGGGACCTCATGGGACAACACAGCCAGGACCATGTGATAGCCCAATTGCCATAAGGTTTTTTATGAGTTCCAACTTGACTGTGCAAGGACTTAGGATAAAAAACAGTCCCCAGTTCCATTTCAGATTTGATGGCTGCAGAGACGTGCATATTGAATCAATCTACATAACAGCTCCGAGACAAAGCCCCAACACTGATGGGATTCACATAGAAAATACAAATGACGTGAAAATATACAATTCTGTTATTTCTAATGGTGATGACTGTGTATCTATTGGATCCGGCTGCTATGATGTAGATATAAAGAATATTACATGTGGACCTGGCCATGGAATTAGCATCGGTAGTTTGGGAAATCACAACTCTCGAGCTTGTGTTTCAAACATATTGGTGAGAGACTCACTCATAAAAGTGTCAGATAATGGGGTTAGGATCAAGACATGGCAAGGTGGATCAGGATCAGTATCTGGAGTGACATTCAGCAACATCCACATGGTTAGTGTAAGAAATCCAATCATAATTGACCAGTTCTACTGCCTCACTAAGGAATGCACCAACAAGACCTCTGCAGTACATGTATCAAACATTATCTACACAAACATAAAGGGAACATATGATATAAGTAGCTCTCCAATGCGTTTTGCATGTAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGATATTGAGCTTCTTCCAGCTCAAGGATACATAGTGAATGACCCTTTCTGTTGGAATGCTTATGGAGATTTGGAGACACTAACCATTCCACCAGTCTCTTGTTTGTTGGAGGGCAGTCCTCAGTCTGTGTTAGAGCGTGACATAACTCCTTGCTGA 1392 0.4188 MFRVKHSHILPLAFCIFFLTLFLLVQARHHSHTKHKHSHSHKSSKPPKQAPPSPPHNENHNNASCIFDVTKFGAIGDGKTDDTESFKMAWDTACQSESSVNVILIPQGFSFLIHSTIFTGPCQGGMVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLDGGGLIDGRGEKWWDLPCKPHKGPHGTTQPGPCDSPIAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCRDVHIESIYITAPRQSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGNHNSRACVSNILVRDSLIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKECTNKTSAVHVSNIIYTNIKGTYDISSSPMRFACSDSVPCTNLTLSDIELLPAQGYIVNDPFCWNAYGDLETLTIPPVSCLLEGSPQSVLERDITPC 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02738 463 Pfam Glycosyl hydrolases family 28 99 416 IPR000743 GO:0004650|GO:0005975
Cca03g02738 463 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 453 - -
Cca03g02738 463 PANTHER - 9 453 - -
Cca03g02738 463 SMART pbh1 230 256 IPR006626 -
Cca03g02738 463 SMART pbh1 257 278 IPR006626 -
Cca03g02738 463 SMART pbh1 280 300 IPR006626 -
Cca03g02738 463 SMART pbh1 310 331 IPR006626 -
Cca03g02738 463 SMART pbh1 339 360 IPR006626 -
Cca03g02738 463 SUPERFAMILY Pectin lyase-like 64 450 IPR011050 -
Cca03g02738 463 Gene3D - 51 449 IPR012334 -
Cca03g02738 463 ProSitePatterns Polygalacturonase active site. 287 300 IPR000743 GO:0004650|GO:0005975
Cca03g02738 463 MobiDBLite consensus disorder prediction 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02738 Cca-Chr3 48729413 48732069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02738 66 463 Glycoside Hydrolase AT1G02460 71.322 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02738 - - gmx:100778836 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02738 03 48729413 48732069 Cca03g02738 03 48729413 48732069 ECH
Cca02g01315 02 31468032 31470563 Cca03g02738 03 48729413 48732069 ECH
Cca11g02809 11 55516281 55519723 Cca03g02738 03 48729413 48732069 ECH
Cca03g02738 03 48729413 48732069 Cca02g01315 02 31468032 31470563 PCT