Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02733 ATGGACGATTGCTGTGCCGTTTGCGCCGAGCCTTTGGAATGGCTTGCCTACGGACCCTGTCTGCACCGGGAGGTCTGTTCCACGTGCGTCGCTCGCCTCCGTTTCATCTGCGACGATCGCCGTTGCTGCATCTGCAAGACCCAATGCAACCTCGTATTCGTCACCAAGGCTCTTGGAGATTATACGAGGATGATTAATGACTTTTCGGCCCTTCCTTCGGAGGTAAGGGAGGGCAAGGTTGGATCATACTGGTACCATGAGGATACAAATGCATTTTTTGATGATGTGGACCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCGTGCAGTGTATGTGACAAGATGGAGGAGCAACCGCAGGATGCTGCCTCAAGGCGGCGAGCAAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCATCGTCATAAGTTGCATATGTGCGGTTTATGTTTGGAGGGAAGGAAGGTTTTTATATGTGAGCAAAAGCTATACACCAGAGCACAGTTGAATCAACACATAAGCACAGGTGATTCTGAGGTGGACGGAAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCCATGTGTGAATTCTGTAGAACCCCATTTTATGGGGACAATGAACTGTATATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGCCAGTATGAATACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCCTGCCTTGCTAAGAAATTTGTTGTTTTTCAATCTGAATCTGAGATGAAGAGGCATAATGCTATTGAACACGGAGGGCGGATGTCACGATCTAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTTCGATACCGACATGGTAATGAACATGACCAACGCCGTGGAAGAGGTGGTGCTGGAAGAGGCCGTTCGTTTCGTCGTGATGTTTCTGAAAATCAACTGTCTATGGCCATTGAAGCTAGTTTGGAGACAGCTAATGCAGAGCAAACATTCCGGGATCAATCAACATCAAGTAGTGGGCAAGTTCCTGTTGATGATGGGAATGCTGATATCGATTCCATCCTTCAGCCATTTGAATCATTAGCTACAGCTGGTTCTGAACCAGCTTCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGGAATGGACCTCTGGAAGATTCTTCCTTTCCACCGCTGCCCATAGCTTCTGTCAATGGCCAGCAAAGGTCCAGAAATGAATCTGAAGGTTCATCTGGTAACACTATGGCTGCACGTTTGCGTCGGCATGGAAACAGAAAAGTAACCGTTATTAATTCTGGTAATGCTGGTAATGCTTGGCCAGCAGCAGGTCGTGGACTGGCAGTACAATCATCAAGTAATTCTTCCCAATCTAAACTGTCAACAAGTAATGCTCTTGGAGTATCTCGTGGTCTTTCACCATCAACTTATGCTGGTTCTATTCAGGCTACACAGAGAACTTCTCATGGACAGTTACCTGCTGGTTCATCAAGGGACAATGGCAGAATAGTACACTCTGCATCTGCTCCAAATCTTATCGAAAATAACTCTGCTGAAGTTTCAAATTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTGAGTAAGTTACCTGCAAGCAGCAAGTCTTCATTAAATGTGGAAAATGTTCAGTCTGCTAACAAGTCCTTGGTTGAAAAGATTCGTGGTGCTCTGGATTTTGATGAAGAAAGATACACTATATTTAAAGACATATCTGCCCAATATCGGCAAGGCACAATAGATACAGGTACATATCTGGACTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGTCCGGATTCTCAGAAGCAGAAAGAGCTTGTTGATGCTCACAATGCTAGTTTGCAAAGAAATGCTTTACCGGAATATAACTTGGTTCTAGGCAGCTCTAGCATCCATCGCAAAGACAGTAGTGTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATGGTAGGGGGAGTAACTCCACAGAGAAATTAGCAGATAGCTTTTTAAGCACCGTACATCAGCTACAGGCAAGTTATAAATCTTCAGAAGAGAAGGTTGAGGTGTTATCAAGGGGTGATTACCGCAGTGACAGAGGCAAATTAAAAATCGAGCAGCGGATTGATACAAATTCTGGTAGTCAACCTACGATGAGGGTTAGTGGGCACACTGAAACATCAAACGACAGTTTATCTAATCAAAGTAGAGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAACTTCTAAGTTCCTGAGAGTGCGCCTTGGTGATGGTTCTGTTTCGGCCCTTCTTGATCAATCAGATCCTGCAACAACAGAAAACTCAGAAGCTAACAAGGATGACTCTAGTGGAGGGCTGCCTGTGCGAGGTGTTTGGCGAAATGGTGGAGGTCATAAACTTTTTTCTTAA 2490 0.4474 MDDCCAVCAEPLEWLAYGPCLHREVCSTCVARLRFICDDRRCCICKTQCNLVFVTKALGDYTRMINDFSALPSEVREGKVGSYWYHEDTNAFFDDVDHYKMIKAMCRLSCSVCDKMEEQPQDAASRRRAKFRNIGQLKGHLFHRHKLHMCGLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLAKKFVVFQSESEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEHDQRRGRGGAGRGRSFRRDVSENQLSMAIEASLETANAEQTFRDQSTSSSGQVPVDDGNADIDSILQPFESLATAGSEPASRYLQALGHSSRNGPLEDSSFPPLPIASVNGQQRSRNESEGSSGNTMAARLRRHGNRKVTVINSGNAGNAWPAAGRGLAVQSSSNSSQSKLSTSNALGVSRGLSPSTYAGSIQATQRTSHGQLPAGSSRDNGRIVHSASAPNLIENNSAEVSNSDFPPVSAAQVSKLPASSKSSLNVENVQSANKSLVEKIRGALDFDEERYTIFKDISAQYRQGTIDTGTYLDYVQQFGLSHLVLELARLCPDSQKQKELVDAHNASLQRNALPEYNLVLGSSSIHRKDSSVNKKGKGKSVDGRGSNSTEKLADSFLSTVHQLQASYKSSEEKVEVLSRGDYRSDRGKLKIEQRIDTNSGSQPTMRVSGHTETSNDSLSNQSREDGGGGNKQRKKTSKFLRVRLGDGSVSALLDQSDPATTENSEANKDDSSGGLPVRGVWRNGGGHKLFS 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02733 829 PANTHER EBR1 1 828 - -
Cca03g02733 829 MobiDBLite consensus disorder prediction 302 326 - -
Cca03g02733 829 CDD RING-HC_ZNF598 5 46 IPR041888 -
Cca03g02733 829 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Cca03g02733 829 MobiDBLite consensus disorder prediction 706 829 - -
Cca03g02733 829 SMART c2h2final6 252 281 IPR013087 -
Cca03g02733 829 SMART c2h2final6 197 220 IPR013087 -
Cca03g02733 829 SMART c2h2final6 221 251 IPR013087 -
Cca03g02733 829 SMART c2h2final6 108 145 IPR013087 -
Cca03g02733 829 MobiDBLite consensus disorder prediction 412 433 - -
Cca03g02733 829 MobiDBLite consensus disorder prediction 345 362 - -
Cca03g02733 829 MobiDBLite consensus disorder prediction 299 327 - -
Cca03g02733 829 MobiDBLite consensus disorder prediction 396 444 - -
Cca03g02733 829 MobiDBLite consensus disorder prediction 732 764 - -
Cca03g02733 829 MobiDBLite consensus disorder prediction 468 521 - -
Cca03g02733 829 MobiDBLite consensus disorder prediction 665 686 - -
Cca03g02733 829 PANTHER ZINC FINGER PROTEIN 598 1 828 IPR044288 GO:0061630|GO:0072344
Cca03g02733 829 MobiDBLite consensus disorder prediction 345 369 - -
Cca03g02733 829 MobiDBLite consensus disorder prediction 791 808 - -
Cca03g02733 829 MobiDBLite consensus disorder prediction 710 731 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02733 1 829 C2H2 Transcription Factor Family AT3G62240 53.497 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02733 K22381 - gmx:100799878 1448.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02733 03 48684394 48689018 Cca03g02733 03 48684394 48689018 ECH