Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02731 ATGGGACCTACATCTACTCCTGTGCTACCGACACCTACACGTAATCGGTTTGGGTTGGTGTGTGACAGGCAATATTCGGTTATAGAAGTTCTTTCGCAATCTCACCAACCCCTTAATTTGGGCGTCAAATCTAACGGCGATACCGCAAGTTCCGGTGGCCGGTCTGGTCAGCCTCTAGCGAGTCACATTCTTTGCTTCAAACCCATTCGTTCTCACTCGCTTCAGATTGAGAAATGGCAGCAGAAACCTTTCTATTTACATCTGATGCTCGATGCATGCCTTGAACAGGATCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGGTGAGATCACAACCAAGGCCAATGTAGACTATGAGAAGATTGTCCGTGACACATGCCGCAGCATTGGATTCATCTCCGATGATGTTGGTCTCGATGCTGACAAATGCAAGGTCTTGGTCAACATTGAGCAGCAGAGCCCTGATATCGCCCAGGGTGTGCACGGTCACTTCACCAAGCGCCCAGAGGAAGTTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCCACTGATGAAACCCCTGAGTACATGCCTCTAAGCCATGTCCTTGCAACCAAACTCGGCGCTCGCCTCACCGAGGTAAGGAAGGATGGTACCTGTGCTTGGTTGAGGCCTGATGGCAAGACTCAAGTAACTGTTGAGTACTACAATGAAAATGGTGCCATGGTTCCAGTTCGTGTCCACACTGTTCTCATATCCACCCAGCATGATGAGACTGTGAGCAATGACCAgattgctgctgaccttaaagagcatgttatcaagcctgtcattcctgagaagtacctggatgagaagaccatcttccaccttaacccttctggtcgttttgtcattggtggcccccacggtgatgctggtctcactggaagaaagatcatcattgatacctatggaggctggggtgcccatggtggaggtgcattgttcaagtttcttatgccattgCTACACTATTTCTATTCGATTCCAGCGGAAAGAATCATGAGTTGTTTCAGCTGTTGTGAAGAAGATGACTTCCAGAAGACTGCTGAAAGCGGAGGACAACATCTGATCAAAAACACAACAGGAAGTGATGGAAACGGTCGTGCCTCTGAAACTGCAAAGCAGGGTACTCAAACTGTTAAAATTCAGCCCATTGAAGTTCCTGAATTATCGGTGGATGAACTCAAAGAAATTACAGATAGTTTTGGAGAAAGTTCTTTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTGAGGAGTGGGCAGGCTGCGGCAATCAAGAAATTAGATGCCAGTAAACAGCCTGATGAGGAATTTTTGGCCCAGGTTTCAATGGTTTCAAGGCTGAAGAATGAAAATTTTGTTCAATTGCTTGGTTATTGCATTGATGGAAACTCCCGTGTTCTTGCTTATGAGTTTGCATCCAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGCGTTAAAGGAGCACAGCCTGGTCCTGTTCTAACATGGACACAAAGAGTTAaaattgctgtaggggctgctaaagggcttgagtacttgcatgagaaagctgatccccacattatccacagggacatcaagtcaagcaatgtactaatctttgatgatgatgtggctaaaatcgcagattttgatttgtcaaaTCAGGCTCCTGACATGGCGGCACGTCTCCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAGTATGCAATGACTGGTCAATTGAATGCTAAGAGTGATGTATACAGCTTTGGCGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAGCCTGTAGATCATACACTACCACGTGGGCAGCAGAGCCTGGTTACTTGGGTAAATGCAAATCTCATCATTGCAATATAA 1953 0.3799 MGPTSTPVLPTPTRNRFGLVCDRQYSVIEVLSQSHQPLNLGVKSNGDTASSGGRSGQPLASHILCFKPIRSHSLQIEKWQQKPFYLHLMLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKDGTCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGALFKFLMPLLHYFYSIPAERIMSCFSCCEEDDFQKTAESGGQHLIKNTTGSDGNGRASETAKQGTQTVKIQPIEVPELSVDELKEITDSFGESSLIGEGSYGRVYYGVLRSGQAAAIKKLDASKQPDEEFLAQVSMVSRLKNENFVQLLGYCIDGNSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLTWTQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWVNANLIIAI 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02731 650 Gene3D Phosphorylase Kinase; domain 1 381 494 - -
Cca03g02731 650 SUPERFAMILY S-adenosylmethionine synthetase 89 171 IPR022636 GO:0004478|GO:0006556
Cca03g02731 650 Gene3D - 179 201 - -
Cca03g02731 650 ProSitePatterns S-adenosylmethionine synthase signature 1. 181 191 IPR022631 GO:0004478|GO:0006556
Cca03g02731 650 CDD S-AdoMet_synt 90 321 - -
Cca03g02731 650 MobiDBLite consensus disorder prediction 370 396 - -
Cca03g02731 650 SUPERFAMILY S-adenosylmethionine synthetase 177 301 IPR022636 GO:0004478|GO:0006556
Cca03g02731 650 ProSiteProfiles Protein kinase domain profile. 420 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02731 650 Pfam S-adenosylmethionine synthetase, C-terminal domain 302 332 IPR022630 GO:0004478|GO:0006556
Cca03g02731 650 Pfam S-adenosylmethionine synthetase, central domain 179 300 IPR022629 GO:0004478|GO:0006556
Cca03g02731 650 SMART serkin_6 420 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02731 650 SUPERFAMILY S-adenosylmethionine synthetase 302 332 IPR022636 GO:0004478|GO:0006556
Cca03g02731 650 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 352 645 - -
Cca03g02731 650 TIGRFAM metK: methionine adenosyltransferase 89 331 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca03g02731 650 Gene3D - 89 332 - -
Cca03g02731 650 MobiDBLite consensus disorder prediction 369 396 - -
Cca03g02731 650 ProSitePatterns Protein kinases ATP-binding region signature. 426 449 IPR017441 GO:0005524
Cca03g02731 650 Gene3D - 202 304 - -
Cca03g02731 650 Gene3D Transferase(Phosphotransferase) domain 1 495 648 - -
Cca03g02731 650 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 352 645 - -
Cca03g02731 650 Pfam Protein tyrosine and serine/threonine kinase 425 629 IPR001245 GO:0004672|GO:0006468
Cca03g02731 650 Pfam S-adenosylmethionine synthetase, N-terminal domain 89 163 IPR022628 GO:0004478|GO:0006556
Cca03g02731 650 SUPERFAMILY Protein kinase-like (PK-like) 397 641 IPR011009 -
Cca03g02731 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02731 Cca-Chr3 48652756 48665651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02731 408 646 Receptor kinase-like Gene Family AT4G02010 52.893 8.56e-72 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Cca03g02731 PK_Tyr_Ser-Thr 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02731 K13436 - gmx:100499642 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02731 03 48652756 48665651 Cca02g01386 02 32356542 32357299 ECH
Cca11g02645 11 53719136 53721896 Cca03g02731 03 48652756 48665651 ECH
Cca08g01281 08 38458032 38460347 Cca03g02731 03 48652756 48665651 ECH
Cca03g02731 03 48652756 48665651 Cca03g02731 03 48652756 48665651 ECH
Cca02g01324 02 31553981 31557011 Cca03g02731 03 48652756 48665651 PCT