Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02729 ATGGGTGGCGATGCAACATACTCGGCGGCGAAGATTTCGGTGTGGTGGGACATGGACAAGTGCCGCGTCCCCAAGGGCCAAAACGCCAACTCCGTGGCAAAGAACATAACGACAGCGCTGGTGAACATGAACTACGTGGGCCCCCTCACCATCTCCGCCTACGGCGACACCACCCGCATACCCAGGCCCATCCAGCACGCCCTCTCCAGCACCGGCGTTTCCCTCAACCACGTCCCCTCCACCTCCGCCGACAAGAGGATCCTCGTCGATATGCTGCTCTGGGCCGTAGACAATCCCGCCCCCGCCAACTACTTGCTCATTTCCGGCGACAGAGAATTCTCCAACGCTCTCCACCAACTCAGCATGCGACGCTACAACATCCTCCTCGCCCAACCGCCCCACCTCCCCCGCCTCGCCGCCGCCAGACTCCTCTGGCACTGGGCTACCCTCTCCGCCGGCGGCTCCCCTTTCTGCCCCCTCGACTCCAAACCCAAATACGTTAGAAAAAGCAGCACAGCATTGCCTCTTCAAATGCCCAATCCACCAGCACGGACACAGTCCATGTCTCTTTTCAAAGCTCCTCACGAATTCTTTCCTTCTAAATGTAACCTCCCTGTAATCCCAACTGCTTCTGAAACTTCTTCCAGGGAAAATCAACCTACGTCCAATCCAATCCCTGATATGCCTAGGCTGAAGCTTAATCTCCAAGAAACCAGGGGTGATTCTAGAGCTGACTACGACGTGGAGGGTCTTATTGATGTTATTATGAGAGCCCTAGAGTTTCTCAAGGTTCAAATGATTGTACCCTCCGAAGCGAATATAACATGTTGCATTCGTTATGGGGATCCCAGGTATCAGATGATTGATGTTAGGAAGGCCTTGGATTTCGCAATTCAGCAACGTAGGGTAGGGATACGAGTCCTTGGGGCTTTACATTTGTATCATGGTACAAATCATATGCTCTACAAGTGTGTCAATCATACAAGTGGTCAACCTAGTGATTTCCCACAACCAGTATGGGATAGAGTTGAGCAGTTTCTTCGGTCATCATCAGGGAGATCATTGATTTTGGTATCACGTTGCAGATATGAAGCCAGTTTGTTTATAAAGCGATCGTGCCTTGAGGAGCTTGTATTAGGGGATGTGCTTAAAATTCTGGAGATGATAATCAATGTCAAGGAATGGATTATACACAGTTGTTGTGGGTGGCAGCCGATTACCATTACGCTTGCGGAGAGTAAAGGCGATGATGCAGATAGTAATTTTGGTGTTCATGTATATCAAATCTGA 1290 0.5062 MGGDATYSAAKISVWWDMDKCRVPKGQNANSVAKNITTALVNMNYVGPLTISAYGDTTRIPRPIQHALSSTGVSLNHVPSTSADKRILVDMLLWAVDNPAPANYLLISGDREFSNALHQLSMRRYNILLAQPPHLPRLAAARLLWHWATLSAGGSPFCPLDSKPKYVRKSSTALPLQMPNPPARTQSMSLFKAPHEFFPSKCNLPVIPTASETSSRENQPTSNPIPDMPRLKLNLQETRGDSRADYDVEGLIDVIMRALEFLKVQMIVPSEANITCCIRYGDPRYQMIDVRKALDFAIQQRRVGIRVLGALHLYHGTNHMLYKCVNHTSGQPSDFPQPVWDRVEQFLRSSSGRSLILVSRCRYEASLFIKRSCLEELVLGDVLKILEMIINVKEWIIHSCCGWQPITITLAESKGDDADSNFGVHVYQI 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02729 429 Pfam NYN domain 11 136 IPR021139 GO:0004540
Cca03g02729 429 CDD PIN_limkain_b1_N_like 11 132 - -
Cca03g02729 429 Pfam OST-HTH Associated domain 358 413 IPR025677 -
Cca03g02729 429 PANTHER LIMKAIN B LKAP 204 399 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cca03g02729 429 PANTHER LIMKAIN B LKAP 5 165 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cca03g02729 429 MobiDBLite consensus disorder prediction 208 229 - -
Cca03g02729 429 MobiDBLite consensus disorder prediction 208 225 - -
Cca03g02729 429 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 204 399 - -
Cca03g02729 429 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 5 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02729 Cca-Chr3 48633463 48635137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02729 3 162 C2H2 Transcription Factor Family AT5G61190 60.606 5.03e-62 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02729 - K17573 gmx:100819329 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02729 03 48633463 48635137 Cca03g02729 03 48633463 48635137 ECH