Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02722 ATGGAACGCGGCGATTTGGCCCTCCCATCTTCGAAATCCTTCAACGACATCGGCGCCCACGCGGAGATACAACCCTTCCACCAGCCGAACAAGAAAAAACTGAGCCGTTGCAAGACAGCCCCAGCCATGGTGAGCATGCGAGACCTGAAACCTAGGACAGCCCAAAAGCCGAAACCCAGATCCAGTTCGATAATCCGACAAGGGATGTGTCTGCTGGGCGTGTACCTCTCGGTGGGAGTGGGCATATACACGTTGAACAGAGAGAGGTTCTCGGGCGTGGAGACCCACCCCGTGGTGGACGCCCTGTACTTCTGCATAGTGACGATGTGCACCATAGGGTACGGCGACATAGCGCCGTTAACGCCGGTGACGAAGGTGTTCGCGTGCGTGTTTGTGCTGGTGGGGTTTGGGTTCATGGACATACTCCTGAGTGGGCTGGTGAACTTCGTTTTGGACTTGCAAGAGAACGTGATCCTGATGAGTGGTTTGAGGGCGCGTAGTTATATTGTGGACGTGGCGAAGGGGAGGATGCGGATAAGGCTGAAGGTGGGGTTGGCGCTTGGGGTTGTGGTGATGTGTATTGGGGTTGGGAGTTTGGTGCTGTACTTCGTGGAGGGCTTGGACTGGGTTGACTCTGTTTACTTGTCGGTTATGTCTGTCACCACGGTTGGCTATGGGGACGCCGCTTTCAAGACGCTTCCTGGTCGCTTGTTCGCCGCCGTTTGGCTTCTCTTTTCCACTCTCATGGTCGCTAGGGCTTTCCTCTACTTGGCTGAGGCCAGAATCGATAGAAGGCATCGCCGCATGGCTAACAATGTCTTGCAAAGGGATATTACCGTTCAGGATTTGCTTGCTGCTGATCTCAACCACACTGGTTTCATCAGCAAGTCAGAGTATGTGATCTTCAAGCTGAAAGAGATGGGTAAAATACAGGAAAAAGATGTGTTGCAAATTTGTGACCAATTCAGGAAGCTTGACCCCTCTAACTGTGGGAAGATAACACTGCCTCATATTTTGGAGGGCTGTTTATGA 1032 0.5271 MERGDLALPSSKSFNDIGAHAEIQPFHQPNKKKLSRCKTAPAMVSMRDLKPRTAQKPKPRSSSIIRQGMCLLGVYLSVGVGIYTLNRERFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPVTKVFACVFVLVGFGFMDILLSGLVNFVLDLQENVILMSGLRARSYIVDVAKGRMRIRLKVGLALGVVVMCIGVGSLVLYFVEGLDWVDSVYLSVMSVTTVGYGDAAFKTLPGRLFAAVWLLFSTLMVARAFLYLAEARIDRRHRRMANNVLQRDITVQDLLAADLNHTGFISKSEYVIFKLKEMGKIQEKDVLQICDQFRKLDPSNCGKITLPHILEGCL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02722 343 Gene3D - 163 283 - -
Cca03g02722 343 PRINTS Two pore domain K+ channel signature 107 135 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca03g02722 343 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca03g02722 343 PANTHER TWO-PORE POTASSIUM CHANNEL 4-RELATED 25 338 - -
Cca03g02722 343 SUPERFAMILY Voltage-gated potassium channels 58 150 - -
Cca03g02722 343 Gene3D - 47 155 - -
Cca03g02722 343 SUPERFAMILY Voltage-gated potassium channels 173 283 - -
Cca03g02722 343 ProSitePatterns EF-hand calcium-binding domain. 287 299 IPR018247 -
Cca03g02722 343 SUPERFAMILY EF-hand 284 336 IPR011992 -
Cca03g02722 343 Pfam Ion channel 72 150 IPR013099 -
Cca03g02722 343 Pfam Ion channel 191 259 IPR013099 -
Cca03g02722 343 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 25 338 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02722 Cca-Chr3 48580690 48582349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02722 30 339 Ion Channels AT4G01840 67.178 9.80e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02722 K05389 - gmx:100780438 563.918