Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02720 ATGTCTGACTCTGATATGATGAGGCATGAGAATGGCCAACATGATGAAGAGCTTAAAGATGATGGAAGAACAGCAGCAGAGAGCAGCACAAACGTGGAAAAGAGAAAACAAAAAGAAAAGGGTGAAAGTGTTCCATATCACAGGCTTTTCTTATTTGCAGATTCCTATGACATCATTTTGATGGTTGTTGGCACCATTGGAGCCATTGGAAATGGTCTCGGGATGCCCCTCATGACATTGCTGTTCGGGGAACTGATTGATAGCTTTGGAAATAACCAATTTAGCCCCAACGTTGTCAAACAAGTTTCCAAGGTTTGTCTGAAATTTGTGTACTTAGGAATAGGCACTGGTGTTGCTGCTTTCCTCCAGGTAACATGCTGGATGGTCACAGGGGAAAGACAGGCTGCAAGAATAAGGGGCTTGTATTTGAAAACTATACTAAGACAGGATATTGCTTTCTTTGACAAGGAAACTAACACTGGAGAAGTTATAGGGCGGATGTCAGGTGACACTGTTCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAGATTTCTGCAGCTAATAGCAACATTCATTGGGGGCTTTGTGATAGCATTTATCAAAGGGTGGCTTCTAACTGCTGTCATGTTATCTGCTGTTCCACTTGTTGCTGCTGGTGGGGCTGCTATGGCCTTTATCATAGGAATGATGGCAACACGAGGTCAAAGCGCGTATGCAAAAGCCTCACATATAGTTGAGCAGACAATAGGCTCAATAAGAACTGTTGCATCCTTTACAGGGGAAAAGCAAGCAGTGTCTAATTACAAGAAATTTCTTGCAGATGCTTACAAATCAGGAGTGTATGAAGGTTTCGCATCAGGAATTGGTCTTGGCATAGTTATGTTAATTATTTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGATGATAATGGAAAAAGGATATGGTGCAGGTGCAGTGGTCAATGTGTTTGTTGCTGTGTTAAATGCTTCCATGTCTCTTGGCCAGGCATCTCCTTCCATGAGTGCTTTTGCTGCAGGCCAAGCAGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCCGAGATAGATGCTTATGACCCTAATGGAATAAAAGTAGAGGATATTCATGGTGAGATACATCTAAAGCATGTTTATTTCAGTTATCCAGCCAGACCTGAGGAGTTAATATTCAATGGATTTTCTCTTCATATACCTAGTGGCACCACTGCAGCTTTAGTAGGACAAAGTGGAAGTGGGAAGTCTACAGTTATCAGTTTGATAGAAAGATTTTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCACTAATGTGAAAGAATTTCAGCTTAGATGGATCAGAGGAAAAATTGGCCTTGTCAGCCAGGAGCCAGTGTTGTTTGCATCAAGCATCAAGGATAATATTGCATATGGAAAAGAGGCAGCAACAGTCGAAGACATAAGAGCCGCAGCAGAACTTGCAAATGCTGCTAAATTCATTGACAAACTGCCACAGGGATTGGACACAATGGTTGGGGAGCATGGAACTCAACTATCCGGTGGACAGAAACAGCGCATTGCCATTGCAAGAGCAATCCTGAAAGATCCAAGAATTCTACTTCTAGATGAAGCAACAAGTGCACTTGATGCAGAGTCAGAAAGAATAGTACAAGAAGCTCTTGACAGGATCATGGTCAACAGAACTACCGTGGTCGTTGCACATCGCCTGAGCACAGTGAGAAATGCTGACATGATCGCTGTAATTCATAGAGGGAAAATGGTTGAAAAAGGAACACATATAGAATTAACCGAGGATCCCGAGGGAGCTTACTCTCAACTTATACGTTTACAAGAAGGAAACAGGGAATCAGAAGAAGCAACAGACAATCAAAGGAAGAGGGAACTTTCCTCAGAATCCTTTACAAAGTATAGTCAAAGGGTGTCACTTAGAAGATCAGGATCATCATTGGGGAATAGTAGCCGCCACTCCTTTTCAGTTTCATTTGGCTTACCTACAGGAGTTAACATCCCTGATCCTGAACATGAAAATTCACAGCCTCAAGAAAAATCACCAGAAGTTCCACTCCGGCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTGCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGTACCATATTTCCGATATTTGGTGTGCTGCTATCCAGCGTTATCAAAACATTTTTTAAACCATTTCCTGAGATGAAAAAGGATTCCAAGTTTTGGGCAGTCATGTTTGTTATACTAGGACTTGGATCCTTACTAGCAATTCCAGCCCGAAGTTACTTTTTCGCTGTGGCTGGCAGTAAGTTAATCCGACGAATCAGGCTCATTAGTTTTGAGAAGGTGATCAACATGGAGGTTGGTTGGTTTGATGAGCCTGAGCACTCTAGTGGTGCAATTGGTGCTAGGCTCTCAGCAGATGCTGCATCAGTGCGTGCCCTTGTTGGTGATGCTTTAGGACTGTTGGTTCAAAATATAGCAACAGCATTGACAGGTTTGATTATTGCTTTCGTTGCGAGCTGGCAGTTGTCATTTATTCTTCTTGCCTTAGTTCCCCTCATCGGAATGAATGGTTATATTCAAATGAAATTCATGAAGGGAACTAGTGAAGATGCAAAAATGATGTATGAGGAAGCGAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCTGAGGAGAAAGTTATGGAACTATACAGGAAGAAATGTGAAGGTCCAATGAATGCAGGGATACGACAAGGCTTGATAAGTGGAACAGGATTTGGGGTTTCATTTTTCTTGCTCTTTAGTGTGTATGCAACCAATTTCTATGCTGGAGCCAGATTTGTAGAAGCTGGCAAGGCATCATTCTCAGATGTTTTTCGGGTTTTCTTTGCTTTAACTATGGCATCTATCGGAATTTCCCAATCAAGCTCCCTTGCTCCTGATTCTAACAAAGCCAAGATAGCCACTGCTTCCATATTTAGAATAATTGATAGGAAATCGAATATAGATCCAAGTGACGAGTCTGGTAGCACACTGGATAGCGTAAAGGGAGAAATAATGATTCGTCATGTAAGCTTTAAGTATCCATCTAGGCCAGACATACAAATTTTTCGAGACCTTAGCTTGACTATCCATTCAGGCAAGACTGTGGCCCTTGTTGGTGAAAGTGGGAGTGGGAAATCCACTGTGATTGCCTTGTTACAGAGATTTTATGATCCTGACTCAGGTCAAATTACACTTGATGGGATAGAAATTCAGAATTTACAGCTCAAGTGGTTAAGGCAGCAGATGGGACTTGTAAGCCAAGAGCCAGTTTTGTTCAATGACACCATCCGTGCCAATATTGCATATGGAAAGGAAGGCAATGCAACTGAAGCAGAAATCATAACTGCAGCAGAACTGGCCAATGCACATGGCTTTATTAGTGGCTTGCAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGAATCCAACTATCTGGTGGGCAGAAGCAAAGGGTGGCCATTGCACGTGCTATAATTAAAAGTCCAAAGATACTGCTACTAGATGAGGCCACAAGTGCACTAGATGCTGAGTCAGAGAGAGTTGTTCAAGATGCATTAGATAAAGTGATGCTGAGCAGGACCACTGTGGTTGTGGCTCATCGTCTATCTACAATAAAAAATGCAGATGTGATTGCAGTGGTAAAAAATGGAGTTGTAGTGGAGAAAGGAAGGCACGAGACCCTCATTAACATCAAGGATGGATTTTATGCTTCCTTGGTCCAGCTTCATACAAGTGCTACAACAGCATAA 3846 0.4251 MSDSDMMRHENGQHDEELKDDGRTAAESSTNVEKRKQKEKGESVPYHRLFLFADSYDIILMVVGTIGAIGNGLGMPLMTLLFGELIDSFGNNQFSPNVVKQVSKVCLKFVYLGIGTGVAAFLQVTCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGRFLQLIATFIGGFVIAFIKGWLLTAVMLSAVPLVAAGGAAMAFIIGMMATRGQSAYAKASHIVEQTIGSIRTVASFTGEKQAVSNYKKFLADAYKSGVYEGFASGIGLGIVMLIIFCGYALAVWFGAKMIMEKGYGAGAVVNVFVAVLNASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGIKVEDIHGEIHLKHVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGTNVKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKEAATVEDIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHIELTEDPEGAYSQLIRLQEGNRESEEATDNQRKRELSSESFTKYSQRVSLRRSGSSLGNSSRHSFSVSFGLPTGVNIPDPEHENSQPQEKSPEVPLRRLASLNKPEIPVLLIGCVAAIANGTIFPIFGVLLSSVIKTFFKPFPEMKKDSKFWAVMFVILGLGSLLAIPARSYFFAVAGSKLIRRIRLISFEKVINMEVGWFDEPEHSSGAIGARLSADAASVRALVGDALGLLVQNIATALTGLIIAFVASWQLSFILLALVPLIGMNGYIQMKFMKGTSEDAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMNAGIRQGLISGTGFGVSFFLLFSVYATNFYAGARFVEAGKASFSDVFRVFFALTMASIGISQSSSLAPDSNKAKIATASIFRIIDRKSNIDPSDESGSTLDSVKGEIMIRHVSFKYPSRPDIQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIQNLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGNATEAEIITAAELANAHGFISGLQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMLSRTTVVVAHRLSTIKNADVIAVVKNGVVVEKGRHETLINIKDGFYASLVQLHTSATTA 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02720 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1274 IPR027417 -
Cca03g02720 1281 MobiDBLite consensus disorder prediction 623 644 - -
Cca03g02720 1281 CDD ABC_6TM_Pgp_ABCB1_D1_like 61 345 - -
Cca03g02720 1281 CDD ABC_MTABC3_MDL1_MDL2 1036 1274 - -
Cca03g02720 1281 Gene3D - 1026 1280 IPR027417 -
Cca03g02720 1281 Gene3D ABC transporter type 1, transmembrane domain 106 1010 IPR036640 GO:0005524|GO:0016021
Cca03g02720 1281 ProSitePatterns ABC transporters family signature. 1176 1190 IPR017871 GO:0005524
Cca03g02720 1281 Gene3D - 382 639 IPR027417 -
Cca03g02720 1281 Pfam ABC transporter 403 551 IPR003439 GO:0005524
Cca03g02720 1281 Pfam ABC transporter 1055 1204 IPR003439 GO:0005524
Cca03g02720 1281 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 715 1001 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02720 1281 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 620 IPR003439 GO:0005524
Cca03g02720 1281 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1036 1273 IPR003439 GO:0005524
Cca03g02720 1281 SUPERFAMILY ABC transporter transmembrane region 696 1020 IPR036640 GO:0005524|GO:0016021
Cca03g02720 1281 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 62 349 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02720 1281 SMART AAA_5 1063 1256 IPR003593 -
Cca03g02720 1281 SMART AAA_5 411 597 IPR003593 -
Cca03g02720 1281 PANTHER - 27 1277 - -
Cca03g02720 1281 CDD ABC_6TM_Pgp_ABCB1_D2_like 704 1019 - -
Cca03g02720 1281 ProSitePatterns ABC transporters family signature. 523 537 IPR017871 GO:0005524
Cca03g02720 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 622 IPR027417 -
Cca03g02720 1281 Pfam ABC transporter transmembrane region 714 985 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02720 1281 Pfam ABC transporter transmembrane region 62 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02720 1281 SUPERFAMILY ABC transporter transmembrane region 47 368 IPR036640 GO:0005524|GO:0016021
Cca03g02720 1281 MobiDBLite consensus disorder prediction 1 39 - -
Cca03g02720 1281 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 27 1277 - -
Cca03g02720 1281 CDD ABC_MTABC3_MDL1_MDL2 384 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02720 Cca-Chr3 48547595 48553573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02720 18 1275 Calmodulin-binding Proteins AT2G36910 44.540 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02720 K05658 - gmx:100802547 2235.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02720 03 48547595 48553573 Cca02g01332 02 31701805 31708531 PCT