Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02715 ATGGACAACCCACATCCCCACCACTTATCCTTCTTAACTTCCGATCACTTTCTCTCCCAACGCACAGATCCTCCCATCAAGGAAATGGATTTCTTCTCATCTTCAACCACTCATAAAAATAACAATACCAACCATGTCACTGCAGACAAACAACAACACCACCCGCAGGATCAAACCCATGGATCACCCACACGTCTCAATCATCACACCGTAAACACCGGGTTGAATTTAACGTGTGCCAGCCTTGGAGTCACAAAAGCAGAAAACGATGAAACTCATGAGCTGAGTTCTCTTGAAAGCCAATTGCGCAAACTACAAGAAGAGAATAGCAAATTGAGAACTGTGCTGGACCAAATTACCAAAAGTTATACCCAACTACAAGCTCAGTTGTTCATCGCTTTGCAGAAACAAAAGTTTCCTCAGAATACGGAAGTGTGGGGACAAAAAGTTGTGGAGGGAGGAGCATGCAGGAAAAATGCATCGGCTTGTGATGATGGCGAGGTATCGGCATGTCGTTCAAACAACGGAGAGGTAATGTCGAAGAGAGATGATGCTGATGAGGCTCAATTGACTAAACTGAATCTTGGAAAGAAGGCTTGTCCTGATGTTGCAGAAGAACGGTCATCGTCACAGAGTTGGGAAGAAGAACCCAAAACTGGGCAACAACTTGCTGCTGCTGACCAGATTCCTTTCAGAAAAGCCAGGGTTTCCGTACGTGCTAGATCAGAAGCTCCCCTGATTAGCGACGGATGTCAATGGAGGAAATATGGACAAAAAATGGCGAAAGGTAACCCTTGCCCTCGTGCCTACTATCGCTGCACCATGGCCGTAGGTTGCCCTGTCCGAAAACAGGTGCAAAGATGCGCAGAGGACAAGACAGTGCTGATAACAACCTACGAAGGGAATCACAACCACCCTCTGCCACCGGCTGCCTCGGCCATGGCAAACACCACGTCAGCAGCTGCGGCCATGCTGCTATCAGGTTCAACGCCCAGCAAGGAAGCGCTAACAAACTCCGCAGGATATTACTCTTCCCTTCCCTATGCTTCAATGGCAACCCTATCAGCTTCGGCACCATTCCCAACCATCACCCTCGACCTCACGCAAACCCCCAACGCCATCATGCACCGAATACCTACCTTCCCTCTCCCACTGCATCATGCTCATGCATCTGCTGCCCCCCACCTCCTAGGCCACCCCATGTTCTTCTCTCAGAATAAGCTTCCGCAGCGACAACCCTCCACCATGGTGGAAACGGTCAGCGCAGCCATTGCTTCCGATCCCAACTTCACTGTCGCTTTGGCAGCGGCTATCTCTTCCATCATTGGGAGAGGCGCTGATGCTAATAACAATGTCAATGCCTCACCGCACCTTCCTCACTCCACCAACTAG 1392 0.4978 MDNPHPHHLSFLTSDHFLSQRTDPPIKEMDFFSSSTTHKNNNTNHVTADKQQHHPQDQTHGSPTRLNHHTVNTGLNLTCASLGVTKAENDETHELSSLESQLRKLQEENSKLRTVLDQITKSYTQLQAQLFIALQKQKFPQNTEVWGQKVVEGGACRKNASACDDGEVSACRSNNGEVMSKRDDADEAQLTKLNLGKKACPDVAEERSSSQSWEEEPKTGQQLAAADQIPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPAASAMANTTSAAAAMLLSGSTPSKEALTNSAGYYSSLPYASMATLSASAPFPTITLDLTQTPNAIMHRIPTFPLPLHHAHASAAPHLLGHPMFFSQNKLPQRQPSTMVETVSAAIASDPNFTVALAAAISSIIGRGADANNNVNASPHLPHSTN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02715 463 MobiDBLite consensus disorder prediction 201 227 - -
Cca03g02715 463 SUPERFAMILY WRKY DNA-binding domain 240 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02715 463 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02715 463 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 450 IPR044810 GO:0003700
Cca03g02715 463 MobiDBLite consensus disorder prediction 29 49 - -
Cca03g02715 463 Gene3D WRKY domain 232 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02715 463 MobiDBLite consensus disorder prediction 20 65 - -
Cca03g02715 463 Pfam WRKY DNA -binding domain 249 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02715 463 Coils Coil 88 122 - -
Cca03g02715 463 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 22 450 - -
Cca03g02715 463 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02715 Cca-Chr3 48501134 48504869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02715 82 442 WRKY Transcription Factor Family AT4G04450 43.720 2.48e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g02715 WRKY 4.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02715 - - gmx:100817839 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02715 03 48501134 48504869 Cca02g01339 02 31790710 31801737 PCT