Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02713 ATGGGCAAAGCCGCTAGCTCTTCTTCCTCCTCTATTAGCAGCACCACCAACCGTCACCTTCTCATTTCAACCGCATCATCTCTCACTCAACACCTTCCCACTGATCTCAGCCTTGGTCTCAGCATTTCCGCCGCTCAACATGTCTCAAGGGGGCACCCACAAGGTGCTCATGAAGTCAATGATTGCAACGATCATACCAGCTTCTTTGTCAAGGTCTACATGGAAGGCATTCCAATTGGAAGAAAGCTCAATATACTAGCTCATGGAAGCTACTATGAGTTAGTGAAGACTCTTGAACACATGTTCGACACTACCATTCTTTGGGGGACAGAGATGAATGGAGTGCAACCCGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGTGATGTCCCTTGGGAGATGTTCTTGTCCACGGTAAAGAGGTTGAAGATTACAAGGGTAGACACATTCGGGTGTTGA 483 0.472 MGKAASSSSSSISSTTNRHLLISTASSLTQHLPTDLSLGLSISAAQHVSRGHPQGAHEVNDCNDHTSFFVKVYMEGIPIGRKLNILAHGSYYELVKTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02713 160 PANTHER AUXIN-INDUCED PROTEIN 2 159 - -
Cca03g02713 160 SUPERFAMILY CAD & PB1 domains 62 152 - -
Cca03g02713 160 Gene3D - 61 159 - -
Cca03g02713 160 ProSiteProfiles PB1 domain profile. 67 157 IPR000270 GO:0005515
Cca03g02713 160 Pfam AUX/IAA family 51 154 IPR033389 -
Cca03g02713 160 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 159 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02713 Cca-Chr3 48477119 48478161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02713 40 152 B3 DNA Binding Superfamily AT4G23980 31.858 8.60e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca03g02713 AUX_IAA 7e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02713 K14484 - gmx:100783140 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02713 03 48477119 48478161 Cca02g01341 02 31826442 31828094 PCT