Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02712 ATGATTCAGAAGATGTTTGACTCCACACGCTCGGGGATGACAAGAAGTTCTTCCCACATGGCCTCCATTTATGAGAATGATTTTCTTGAGCTGGTGTGGGAAAATGGCGAAGTTGTTGTACGAGGAGGTTCATCAAATGGAACAAAAAAGAGTCACGAGGAAAGAATATTACATGATCATCAAGATGGCAGCATTACAAAAAGAACAAGGTTGAACACATTATACTCACTTGAGGATCACTTTCCCCATCTAAGGGACTCTGAAATGACCTCTTCCTCTTCACATCAAAGCAATAATGGTCAAGATTCGTGTCAATCCTCCCAAAGAAAGAACTCCTGCAAGCTCAATGAAGAATTTGCAAACTTGTTTACACCAGTAAAAGACTCTAGGCCTGTTACAACAGACATCGGTCACTTACAACAGTGCTTACCTTCATCTCCTCTCAAGAAACAAATAACAGATTCAACACAAACACCACTAGCAACAAATCAAATGACAACAAAAGTGAACTTCTCCAACTTTTCCATACCCGCAGTGTTTCTCAAACAGGGAAACAGTGCAACTCAGCAGACAAAAGAAGCAAGCAAGGTTGAGAAAGTAGCAGCTGATGAATCAGCCAAGGAATCACATGGATTTCTAAAGCAAACATTCTTAACTGTTGAAAGAAGCTCGAAACCACTTCCACCGGTTGATGAACACTCTGAAGCTGTTGGAACTCACAGATTCCGAGGTCAAGGTTTTGACCAAATGCCAAGCTCAGAAACACTTAGAGCCAAGGCAAAAGGTTGTAATAATACTGACATGAGTCATGAACTGTTGCTTGCATCTTCTTCTGTGTGCTCGTTCGGAGCCTCCAACGACCCAAATATTAGTTTCAGGAAACATGAGGACACTGATGACTCAATATATTTCAGTGATAATGATGAAGACCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAATAGAGTCAAGAGAAGCAGAAATCCTGAGGTTCATAACCTATCAGAAAAGAAGAGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAGGAGCTAATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTTGATGATGCCATAGACTATCTTAAGACTCTAAAGCTTCAATTACAGATTATGTCGATGAGTAGTGGATTATGGCCACTTATGATGCTACCTGGGGCGCATCACATGAATAATGGACCACATTTGCCTCAGTTAGTGGGAGGTGGAATGGGATTCAGGCCACCACAGCTTCCTATTCCACCACTTTCTGCCATTACAGATAACAGACTTCAAATGTTTGGTTTCCCAAGCCAAATACCATCCATGCCATTGCCTCATCCACCTTTCTTCCCTGTCATTGGAAATTCTGCCACACAACCACACTTGGCTAATCCACTCCCCAAGAACTTAGATCCTCTTGAAAATCTTAGTGCAACAAAGCAAGTGCCCAATCAGCGATCCTTTCAACACCACATCACTAGTACTCCACTAGCTACTCCTTTCGTTTTTCCACAAAACTAG 1539 0.4172 MIQKMFDSTRSGMTRSSSHMASIYENDFLELVWENGEVVVRGGSSNGTKKSHEERILHDHQDGSITKRTRLNTLYSLEDHFPHLRDSEMTSSSSHQSNNGQDSCQSSQRKNSCKLNEEFANLFTPVKDSRPVTTDIGHLQQCLPSSPLKKQITDSTQTPLATNQMTTKVNFSNFSIPAVFLKQGNSATQQTKEASKVEKVAADESAKESHGFLKQTFLTVERSSKPLPPVDEHSEAVGTHRFRGQGFDQMPSSETLRAKAKGCNNTDMSHELLLASSSVCSFGASNDPNISFRKHEDTDDSIYFSDNDEDPEDMVKQDREGNRVKRSRNPEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMSSGLWPLMMLPGAHHMNNGPHLPQLVGGGMGFRPPQLPIPPLSAITDNRLQMFGFPSQIPSMPLPHPPFFPVIGNSATQPHLANPLPKNLDPLENLSATKQVPNQRSFQHHITSTPLATPFVFPQN 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02712 512 MobiDBLite consensus disorder prediction 85 109 - -
Cca03g02712 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Cca03g02712 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 392 IPR036638 GO:0046983
Cca03g02712 512 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 505 - -
Cca03g02712 512 MobiDBLite consensus disorder prediction 43 64 - -
Cca03g02712 512 MobiDBLite consensus disorder prediction 301 341 - -
Cca03g02712 512 Pfam Helix-loop-helix DNA-binding domain 332 377 IPR011598 GO:0046983
Cca03g02712 512 Gene3D - 324 386 IPR036638 GO:0046983
Cca03g02712 512 MobiDBLite consensus disorder prediction 309 341 - -
Cca03g02712 512 SMART finulus 334 383 IPR011598 GO:0046983
Cca03g02712 512 CDD bHLH_AtPIF_like 328 390 - -
Cca03g02712 512 PANTHER TRANSCRIPTION FACTOR PIF3 1 505 IPR044273 GO:0003700|GO:0006355
Cca03g02712 512 MobiDBLite consensus disorder prediction 47 64 - -
Cca03g02712 512 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02712 Cca-Chr3 48458836 48461873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02712 156 401 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.879 1.85e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g02712 HLH 3.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02712 K12126 - gmx:100784724 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02712 03 48458836 48461873 Cca03g02712 03 48458836 48461873 ECH
Cca03g02712 03 48458836 48461873 Cca02g01344 02 31863761 31866351 PCT