Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02710 ATGGGAAGGCACTCCTGCTGTTACAAGCAGAAACTTAGGAAGGGTCTTTGGTCACCAGAGGAGGATGAAAAACTTCTGAGGCATATAACTAAGTACGGCCACGGTTGTTGGAGCTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGCGGCAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGAAGAAGAAAATCTCATCATTGAACTTCATGCAGTGCTAGGGAACAGATGGTCTCAAATTGCAGCACAATTGTCAGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTGAAGAAGAAACTAAGGCAAAGAGGTATAGACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGGAGAGGGGGACAAAACAAGGAGCCAAGAGTTATCCAATGAATTGAACCTCCTGAATTCAGAGAGTTTCAAGTCAGATGAAGGGTCCTATGAGCAGAGAGCATCTTCAATTGCCCCCAAAGCCTATGAGATGGAAGGCTCTTGCAGCTCCAAGATTAGCACCAAAAACGACACCAACTTGATAGCCAATTGTCCCAACAAAGACTTGTTCCTAGACAGCTACAACACTAGTTGCCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATCACTGACACTCTCCCAACCAATTCAAACTCTTCTCATTGGTTCAGCCCTACAACAGCAGCAAGGCCCTTTGACATGAACTCTGAATTCACTTCCAATGTCATGTCTATTCTTCCACCTTCAACCACCTCTTTCCTCCCTAGTACTACTCTTTGCTACAAGCCATCGCTTGCTGTCCCTTCAGAAGATATTTCAATTTCGGCAGCCTCTTTTGCTTTGAATGGACCCAATTACTGGGAAGCCAATGCCTCCAACAGCAGCAATGGAAGCAACACAAGGGATGGCAGCAGAGAAATGACAAGTGGCAAGAACAGTATGCTCTCTTCTTGGGGATTCACAGAAGAAGCCAAGTGGTCTGAGTACCTCCACAATCCAATGTTAATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATAAGGCCAGCCACACATTTTGTACCTGATGGTAACACTTTAGGGGCCATATTATTGCCTGATTCCAAAGAGCAACAACAACAGTCCCAAACTTCTAGCATCTTCTCCAAAGACATCCAGAAGTTAACAGCAGCCTTTGGACATATATAA 1236 0.449 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLSGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEGDKTRSQELSNELNLLNSESFKSDEGSYEQRASSIAPKAYEMEGSCSSKISTKNDTNLIANCPNKDLFLDSYNTSCQPSDLMGNYPLQITDTLPTNSNSSHWFSPTTAARPFDMNSEFTSNVMSILPPSTTSFLPSTTLCYKPSLAVPSEDISISAASFALNGPNYWEANASNSSNGSNTRDGSREMTSGKNSMLSSWGFTEEAKWSEYLHNPMLMLAAPESLCNQIRPATHFVPDGNTLGAILLPDSKEQQQQSQTSSIFSKDIQKLTAAFGHI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02710 411 MobiDBLite consensus disorder prediction 123 143 - -
Cca03g02710 411 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca03g02710 411 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca03g02710 411 CDD SANT 17 61 IPR001005 -
Cca03g02710 411 PANTHER HOMEODOMAIN-RELATED 1 405 - -
Cca03g02710 411 SMART sant 66 114 IPR001005 -
Cca03g02710 411 SMART sant 13 63 IPR001005 -
Cca03g02710 411 MobiDBLite consensus disorder prediction 123 144 - -
Cca03g02710 411 Gene3D - 11 67 - -
Cca03g02710 411 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Cca03g02710 411 PANTHER MYB DOMAIN PROTEIN 55 1 405 - -
Cca03g02710 411 MobiDBLite consensus disorder prediction 306 329 - -
Cca03g02710 411 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Cca03g02710 411 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Cca03g02710 411 Gene3D - 68 141 - -
Cca03g02710 411 CDD SANT 69 109 IPR001005 -
Cca03g02710 411 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca03g02710 411 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02710 Cca-Chr3 48419135 48420540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02710 1 156 MYB Transcription Factor Family AT4G01680 84.615 3.05e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g02710 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02710 K09422 - gmx:100037467 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02710 03 48419135 48420540 Cca02g01368 02 32141681 32143989 ECH
Cca02g01368 02 32141681 32143989 Cca03g02710 03 48419135 48420540 ECH
Cca03g02689 03 48174397 48176663 Cca03g02710 03 48419135 48420540 ECH
Cca03g02710 03 48419135 48420540 Cca03g02710 03 48419135 48420540 ECH
Cca03g02710 03 48419135 48420540 Cca02g01347 02 31964182 31966095 PCT