Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02708 ATGGGAATGAAGCTGATTCTAATAGCTCTTGCCTTTGTTTCTGTGGTTACAAACGAGGCTAGATCTGAGCCTTTGTTAGAAAACGATGCCGTTTCACTGGCTGCAGCGCCCGGACCTAAGCCTCTCACCGTACCTCTCACTCTTATTCAGGGAGCTGCTTCCAAAGGAGCTGTATGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGATCTGGGGCAAATAGTTGGCTCATTCAATTGGAGGGAGGAGGTTGGTGTAATAACATCAGAAGTTGTGTCTTTAGAAAAACTACTCGTCGCGGTTCCTCAAAATTCATGGAAAAGCAACTACCATTCACGGGGATATTGAGCAATAAAGCTGAAGAAAACCCTGATTTCTTTAATTGGAACAGAGTCAAAGTACGGTATTGTGATGGGGCATCTTTCAGTGGAGATAGTCAAAATGAGGCTGCAAAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATAGAGGAATTATTGTCCAAGGGAATGCAGAAGGCCAACCAGGCTCTTTTATCTGGATGCTCTGCGGGTGGTCTAGCATCTATAATACATTGTGACGAGTTCCGAAGCTTGCTTCCTACATCCACCAAAGTGAAATGTTTGAGTGATGCAGGGTTTTTCCTAGATGCAGTTGATGTATCTGGGGGTCACACACTGAGGAATTTGTTTGGAGGTGTAGTTAACTTGCAGGAAGTGCAAAAAAATCTGCCAAAAAGTTGTCTCAACCAACTGGACCCAACTTCGTGCTTTTTTCCTCAGAATTTGATCAACCATGTTAAGACTCCATTGTTTCTACTGAATGCAGCTTATGATGCATGGCAGCTCCAAGAAAGTTTGGTCCCACCTTCAGCAGATCCCAGTGGCTCTTGGAAAGATTGTAAATATAATCATGCACATTGTAACTCATCTCAAATTCAGTTTCTTCAAGACTTCAGAAATCAAATGCTAAATGACGTGAAAGGCTTCTCAGGGACATCTCAAACCGGGTTATTCATAAATTCTTGTTTTGCTCATTGCCAGTCTGAGAGACAAGATACATGGTTTGCTGATGACTCTCCACTCATTGACAAAACGCCAATTGCAATTGCTGTTGGAGACTGGTATTTTGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCTTCAAGTGA 1224 0.4289 MGMKLILIALAFVSVVTNEARSEPLLENDAVSLAAAPGPKPLTVPLTLIQGAASKGAVCLDGTLPGYHFHPGFGSGANSWLIQLEGGGWCNNIRSCVFRKTTRRGSSKFMEKQLPFTGILSNKAEENPDFFNWNRVKVRYCDGASFSGDSQNEAAKLQFRGQKIWQAAIEELLSKGMQKANQALLSGCSAGGLASIIHCDEFRSLLPTSTKVKCLSDAGFFLDAVDVSGGHTLRNLFGGVVNLQEVQKNLPKSCLNQLDPTSCFFPQNLINHVKTPLFLLNAAYDAWQLQESLVPPSADPSGSWKDCKYNHAHCNSSQIQFLQDFRNQMLNDVKGFSGTSQTGLFINSCFAHCQSERQDTWFADDSPLIDKTPIAIAVGDWYFDRKTVKAIDCAYPCDNTCHNLVFK 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02708 407 Pfam Pectinacetylesterase 41 387 IPR004963 GO:0016787
Cca03g02708 407 PANTHER PECTIN ACETYLESTERASE 3 406 - -
Cca03g02708 407 PANTHER NOTUM-RELATED 3 406 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02708 Cca-Chr3 48391194 48395333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02708 38 406 Carbohydrate Esterase AT3G62060 74.324 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02708 K19882 - gmx:100819978 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02708 03 48391194 48395333 Cca02g01367 02 32129817 32134841 ECH
Cca02g01367 02 32129817 32134841 Cca03g02708 03 48391194 48395333 ECH
Cca03g02690 03 48185652 48190189 Cca03g02708 03 48391194 48395333 ECH
Cca11g02607 11 53313199 53319663 Cca03g02708 03 48391194 48395333 ECH
Cca03g02708 03 48391194 48395333 Cca03g02708 03 48391194 48395333 ECH
Cca03g02708 03 48391194 48395333 Cca02g01348 02 31969034 31973931 PCT