Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02698 ATGGCTTCTATCATAGGCGTCTCCTCCATTTACCAAACCCCCACTCTCGAACTATACCAGAGGCCCACCGCTCCCTCCCTTAGGTTCCAATGTTTGGACTCTAAGTCCCACTTCAACAACGTCCTTAGAGCCCACCGCCACTCCACCTTCAAAGCGGGCCTCAGGCCCACCCCCACCTTCGTTCCTTCCGCCGTCGCCACGCCCAATTCCTCCCTCCTTAGTGAAGAAGCCTTCAAAGGACTAAGCGACGGCTTCGACCCAAACGACCACGACTTCCACCAAAACGCCCATTCCGAAACCGCCAACCCCGACGAACTCGACATTTCCAAGCTCCACTTGCCCACGCGCCTCGTCGAAACCCTCCGCACCCGAGGGATTACGCACCTTTTCCCTATTCAGAGAGCTGTGTTAGTACCTGCACTTGAAGGCAGAGATATCATTGCTCGAGCCAAGACCAGCACCGGTAAAACATTGGCGTTCGGGATTCCAATTATTAAAGGCCTCACTGAAGATGAACTTGCACCTTCTCACAGGCGGTCTGGTAAGCTTCCGAGAGCTTTGGTGCTTGCGCCTACAAGGGAGTTGGCCAAGCAAGTGGAGAAGGAGATAAAGGAATCCGCGCCTTATCTCAACACTGTTTGTGTCTACGGGGGTGTTTCTTATGTTACCCAGCAGAGTGCACTTTCACGCGGTGTGGACGTGGTGGTTGGGACTCCAGGGAGAATAATTGACTTGATAAATGGGAACAGTCTTAAGCTCAGTGAGGTTCAGTATTTGGTCCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTGGAGAATCTTCCATCTCAGAGACAGAGCATGCTTTTCTCTGCAACCATGCCCAGTTGGGTGAAGAAGTTGGCGAGAAAATATTTGGACAACCCATTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTTTAGCAGCCACTGCTACTTCAAAACGAACAATTCTTTCTGATCTTGTAACTGTATATGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATATTGTCTGAAGCACTGCACGGTGATATATCTCAGCATCAAAGGGAGAGAACATTGAATGGTTTCCGGCAAGGAAAATTCACGGTACTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAACTTCCCAATGATCCCGAGACTTTTGTACATCGCTCTGGTCGTACTGGGCGTGCCGGCAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAAATCCCTTGAACGTGATGTTGGCTGCAAGTTTGAATTTGTTAGTCCACCAGCTATGGAAGAGGTTTTGGGGTCATCTGCTGAGCAGGTTGTTGCTACGCTTAATGGAGTTCATCCAGAGTCCATTGAGTTTTTCACCCCAACTGCACAAAAACTGATTGATGAACAAGGAACGAGTGCCCTTGCAGCTGCACTTGCACAACTGAGTGGATTCTCCCGACCTCCATCATCGCGGTCACTTATCACCCATGAACAGGGATGGACTACATTGCAACTAACTCGTGATTCAGATAATAGAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCAGATGTTTATTCTGCAGCTGCTGATGAAGTTGGAAAAATCCATTTAATTGCTGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCTGAGGAAATTGCTAAAGAGTTACTTAATAGGGACATACCACCTGGAAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGACGATGGGCCTCCAAGTGATTTCTATGGGAGGTTTTCTGACAGAGACCGAAGTAACAGAAGAGGTTCTTCTTCCAGGGGAGGTTTTTCTTCTAGGGATCGGAGAGGTGGTGGTTTTAAATCCTCAAGGGGATGGGATGATGACCAAGACTCTGATGATGACTTTGGTGATCGATCTAGGAGAGGTGGTAGAATTTCTAAAACTGGCAATAGCTGGTCTCGGTCAGCAGGAAGAAGCAGTGGGGATGATTGGCTAATTGGGGGTAGAAGATCAAGCAGGCCTTCATCATCAGACAGAGGTGGCTTTGGAggtgcctgctttaactgcggggaatctgggcatcgtgcatcagattgtccaaagacttcaaacaggcgaagcttTTTTTAA 2292 0.4555 MASIIGVSSIYQTPTLELYQRPTAPSLRFQCLDSKSHFNNVLRAHRHSTFKAGLRPTPTFVPSAVATPNSSLLSEEAFKGLSDGFDPNDHDFHQNAHSETANPDELDISKLHLPTRLVETLRTRGITHLFPIQRAVLVPALEGRDIIARAKTSTGKTLAFGIPIIKGLTEDELAPSHRRSGKLPRALVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYALAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLALTNSILSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVKSLERDVGCKFEFVSPPAMEEVLGSSAEQVVATLNGVHPESIEFFTPTAQKLIDEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWTTLQLTRDSDNRRYFSARSVTGFLSDVYSAAADEVGKIHLIADERVQGAVFDLPEEIAKELLNRDIPPGNTISKITKLPPLQDDGPPSDFYGRFSDRDRSNRRGSSSRGGFSSRDRRGGGFKSSRGWDDDQDSDDDFGDRSRRGGRISKTGNSWSRSAGRSSGDDWLIGGRRSSRPSSSDRGGFGGACFNCGESGHRASDCPKTSNRRSFF 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02698 763 Pfam DEAD/DEAH box helicase 130 303 IPR011545 GO:0003676|GO:0005524
Cca03g02698 763 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 33 753 - -
Cca03g02698 763 Gene3D - 709 761 - -
Cca03g02698 763 ProSiteProfiles Zinc finger CCHC-type profile. 740 755 IPR001878 GO:0003676|GO:0008270
Cca03g02698 763 Pfam GUCT (NUC152) domain 535 634 IPR012562 GO:0003723|GO:0004386|GO:0005524
Cca03g02698 763 CDD GUCT_Hera 542 621 - -
Cca03g02698 763 PANTHER - 33 753 - -
Cca03g02698 763 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 314 IPR014001 -
Cca03g02698 763 SMART ultradead3 125 331 IPR014001 -
Cca03g02698 763 Pfam Helicase conserved C-terminal domain 341 448 IPR001650 -
Cca03g02698 763 CDD DEADc 117 315 - -
Cca03g02698 763 CDD SF2_C_DEAD 328 457 - -
Cca03g02698 763 MobiDBLite consensus disorder prediction 642 656 - -
Cca03g02698 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 468 IPR027417 -
Cca03g02698 763 SMART c2hcfinal6 739 755 IPR001878 GO:0003676|GO:0008270
Cca03g02698 763 SUPERFAMILY Retrovirus zinc finger-like domains 720 759 IPR036875 GO:0003676|GO:0008270
Cca03g02698 763 SMART helicmild6 368 448 IPR001650 -
Cca03g02698 763 Gene3D - 333 523 IPR027417 -
Cca03g02698 763 MobiDBLite consensus disorder prediction 617 763 - -
Cca03g02698 763 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 488 IPR001650 -
Cca03g02698 763 Pfam Zinc knuckle 739 755 IPR001878 GO:0003676|GO:0008270
Cca03g02698 763 Gene3D - 107 318 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02698 Cca-Chr3 48272016 48278141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02698 82 470 Eukaryotic Initiation Factors Gene Family AT1G72730 36.430 3.06e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02698 - - gmx:100789516 1230.7