Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02695 ATGGCGTGGCGCGAGCTTGGTACGAAGAGAATATATATGAATTTTACAAAAGTTTTGACTACAACACCATTTAGGCATGTGACAGGATCAAAATTTGCATCCATCTTTGCTGTGCAATCTGTTTATGCATCAGAAAGATGCATGCCAGATATCATCAACCAATCATCTCACGGAGTGGCTGGTTTTGGTAGTGAGACTAAAGAATGTGGAATACGGTGCTTCCATGCTAGTTCGCAAGTCTGGGCAAGAAATGATGGACCATTAGGTTTGAAGACCCCAAAGAGGGTGAAATATTCAAGAAGGGACAATAGAAGACAGCCACCTGTTCGTAATGTCACAGCTACCAAATCTAGTCCTGATAAAATAGTAGAAATATTTGAAGGCATGACTCTTGTTGAACTGGCAAAGCGCTCTGGAAAATCAGTATCTTCTTTGCAGGATGTCCTCACTAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCTTCTCAGCATGGATATTGCTGAACTTGCTGCAATGGAGGCTGGTGTCAATGTTAAAAGGCTACATTCAGATGAAGGTGCAGAAATTTTACCACGTCCTGCAGTTGTAACAGTGATGGGTCATGTTGATCATGGTAAAACTTCTCTTCTTGATGCCTTGCGTCAAACATCAGTGGCAGCCAGGGAGGCTGGTGGCATAACTCAACATCTAGGTGCTTTTGTGGTGGTCATGCCATCAGGAGCATCAATTACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGACGATGGTGTGATGCCTCAAACTCTTGAAGCCATGTCTCACGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTGCAGCTTGCATCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATATTCAGGTTGTTGAAGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAGGAAGCTTTACTACTTCAGGCTGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTAACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTGGTTGTAGGCTCACAATGGGGAAGAATAAGGGGTATTAAAGATATGGCAGGGAAGTTAACTCAACAAGCAACACCTGCTATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCCGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGAAGGCAAAGGAAATATGAGGAGAACAGGCTTAAGAATAAGATGATACAGGACAAGCCAACTACTTCAGATGATTCCGAGGAGGTTCCACAGAGGGTTGAAATGCCAGTAATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACCGATGCATTGAAAACTTTAAATAGTGCTCAGGTTTTCGTAAATGTTCTCCATGTTGGTGTTGGGCCTATTTCTCAATCAGATGTGGACCTGGCACAGGCTTGTGGGGCTTCCATAGTTGGATTTAACGTCAAAAGTCCACCTACTTCACTGAGTCAGGCAGCAGCTCGAGCCAGCATCAAGATAATTCTGCACCGTGTAATTTACCACCTCTTGGAGGACATAGGCAATTTGATAATAGAGAAGGCCCCTGGAACTTCTGAGACCCATATTGCAGGGCAGGCAGAAGTGATGAGCATCTTTGAAATCAAAGGGAGCAAGTCGAAGGGACCTGGTGTTAAGATAGCTGGTTGTCGTGTTATTGATGGCTCTGTGACAAGGTCAGCAACCATGAGGCTTCTTAGGAGTGGGGAAGTCGTGTTTGAAGGACTTTGTACATCTCTTAAGAGGGAGAAGCAGGATGTGGATACTGTGAAAAAGGGAAACGATTGTGGACTAATAATCAACGAATGGCATGATTTCCAGGTTGGAGACGTCATCCAGTGCTTGGAACAAGTCGTAAGGAAACCCAAGTTCATTAAGTCGGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2142 0.444 MAWRELGTKRIYMNFTKVLTTTPFRHVTGSKFASIFAVQSVYASERCMPDIINQSSHGVAGFGSETKECGIRCFHASSQVWARNDGPLGLKTPKRVKYSRRDNRRQPPVRNVTATKSSPDKIVEIFEGMTLVELAKRSGKSVSSLQDVLTNVGEKVESEFELLSMDIAELAAMEAGVNVKRLHSDEGAEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDIQVVEVSATEKIGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRGIKDMAGKLTQQATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQRKYEENRLKNKMIQDKPTTSDDSEEVPQRVEMPVIVKADVQGTVQAVTDALKTLNSAQVFVNVLHVGVGPISQSDVDLAQACGASIVGFNVKSPPTSLSQAAARASIKIILHRVIYHLLEDIGNLIIEKAPGTSETHIAGQAEVMSIFEIKGSKSKGPGVKIAGCRVIDGSVTRSATMRLLRSGEVVFEGLCTSLKREKQDVDTVKKGNDCGLIINEWHDFQVGDVIQCLEQVVRKPKFIKSESGAVRIEC 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02695 713 CDD IF2_mtIF2_II 368 463 IPR044145 -
Cca03g02695 713 Gene3D - 489 594 IPR036925 -
Cca03g02695 713 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 486 601 IPR036925 -
Cca03g02695 713 SUPERFAMILY Translation proteins 598 698 IPR009000 -
Cca03g02695 713 TIGRFAM small_GTP: small GTP-binding protein domain 195 348 IPR005225 GO:0005525
Cca03g02695 713 TIGRFAM IF-2: translation initiation factor IF-2 123 696 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Cca03g02695 713 CDD IF2_eIF5B 196 359 - -
Cca03g02695 713 Gene3D - 190 364 IPR027417 -
Cca03g02695 713 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 192 362 IPR000795 GO:0003924|GO:0005525
Cca03g02695 713 Pfam Elongation factor Tu GTP binding domain 197 353 IPR000795 GO:0003924|GO:0005525
Cca03g02695 713 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 96 704 IPR015760 -
Cca03g02695 713 Hamap Translation initiation factor IF-2 [infB]. 9 699 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Cca03g02695 713 CDD mtIF2_IVc 602 691 - -
Cca03g02695 713 Gene3D Translation factors 365 481 - -
Cca03g02695 713 Gene3D Translation factors 597 698 - -
Cca03g02695 713 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 96 704 - -
Cca03g02695 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 383 IPR027417 -
Cca03g02695 713 SUPERFAMILY Translation proteins 366 448 IPR009000 -
Cca03g02695 713 Pfam Translation-initiation factor 2 485 584 IPR023115 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02695 Cca-Chr3 48236041 48242559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02695 193 582 Eukaryotic Initiation Factors Gene Family AT1G21160 27.887 1.86e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02695 K02519 - gmx:100781314 1251.11