Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02693 ATGTCCTCCTCAAGGCCTAGCCAATCATCCAGCAACAATTCTGGCAGATCATCAAGGCACAGTGCTAGGGTTATTGCTCAGACAACTTTAGATGCAAAACTGCATGCAACTTTCGAGGAATCAGGTAGCTCTTTTGACTACTCCAATTCTGTGAGATTGTCTCCTGGTACAGGCACTGCCAGTGGAGACAATCAACCAAGGTCTGATAAAGTAACAACTGCTTATCTTCATCAGATTCAGAAAAGCAAGCTTATCCAGCCATTTGGGTGCTTGCTAGCATTAGATGAGAAAACATGTAAGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTCACTATGGTTAGTCATGCTGTGCCAAGTGTTGGAGACCACCCTGCCCTTGGCATTGGCACTGACATAAGAACTATTTTCACTGCCCCAAGTGCTGCAGCTATTCAGAAGGCACTAGGTTTTGGAGAGGTTTCACTTCTTAACCCCATTCTAGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTGTCCATCGTGTTACCGGAAGCGTTATCATTGATTTTGAGCCTGTCAAGCCTCATGAAGTTCCCATGACTGCAGCAGGTGCCCTGCAATCCTACAAGCTTGCAGCAAAAGCAATAACTAGGTTGCAATCTTTGCCTAGTGGGAGCTTGGAAACACTGTGTGACACAATGGTTCAAGAAGTTTTTGAACTCACAGGCTATGACAGGGTAATGGCTTATAAATTTCATGATGATGATCACGGTGAAGTGATTGCTGAGGTGAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCACTACCCAGCCACTGATATTCCCCAAGTTACACGCTTTTTGTTTATGAAGAATAAGGTGCGTATGATAGTTGATTGTCGTGCAAAGCATGTTAAGGTGCTTCAGGACAAAAAGATTCCATTTGATTTAACCTTGTGTGGATCAACCTTGAGGGCTGCTCACAGTTGCCACTTGCAATACATGGAGAATATGAAATCTAGTGCTTCCTTGGTTATGGCAGTTGTGGTCAATGACAATGATGAAGATGGGGATAGTGGCTCTGATGCTGTTCAGCCACAGAAGAGAAAGAGACTCTGGGGTTTAGTGGTTTGCCATCACACTACTCCCAGGTTTGTTCCTTTCCCTCTTAGGTATGCTTGTGAATTCCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAACTTGAGATAGAGTATCAGATTGTTGAGAAGAACATCCTGAGGACTCAAACACTCTTGTGTGACATGCTGATGCGAGATGCGCCCCTAGGCATAGTGTCACAGAGTCCTAACATAATGGATCTTGTTAAGTGTGATGGAGCAGCCTTGTTGTACAAAAACAAGGTATGGAGATTAGGGGTAACACCAAGTGAATCTCAGATAAGAGAGATAGCATTGTGGCTCTCTGAGTTCCATAGGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGCTTCCCAGGGGCTGCTGCACTTGGTGATATTGCTTGTGGAATGGCAGCTGTCAGAATAGCTTCCAAAGATATAGTGTTCTGGTTTCGGTCTCGCACTGCGGCTGAAATCCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAAAAGGATGATGGTAGGAGGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACTAGGAGCTTGCCCTGGAAGGACTATGAAATGGATGCCATTCATTCATTGCAGTTAATTTTGAGAAATGCATTCAAAGAGACAGAGAGTATGGAGATAAGCACATATGCTATCAATACAAGACTAGGTGATTTGAAGATTGAAGGGATGCAAGAGCTGGAAGCAGTGACAAGTGAGATGGTGAGGTTAATTGAAACAGCAACGGTGCCAATTCTGGCAGTTGATGTTAATGGGATGGTCAATGGATGGAATACAAAAATTGCTGAGTTGACAGGTCTTCCAGTTGAGAAAGCTATTGGGAAGCATTTACTCATGCTTGTTGAGGATTTTTCTGTAGATAGAGTCAAGAAGATGTTGGACATGGCACTCCAGGGTGAGGAAGAGAAAAATGTCCAATTTGAGATCAAAACACATGACTTGAAGATTGATTCTGGTCCTATAAGCTTGGTCGTTAATGCTTGTGCAAGCAGGGATCTTCAAGACAATGTTGTGGGTGTTTGTTTCGTGGCACAAGATATAACTGCTCAGAAGACAGTGATGGACAAATTCACCCGAATTGAAGGTGATTACAAGGCAATTGTACAGAATCCAAATCCATTGATCCCTCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAATGGAACTCAGCTATGATAAAATTAACTGGATGGAAACGAGAAGAGGTGATGGATAAAATGCTTTTAGGAGAGGTTTTTGGGACCCAAATAGCTTCTTGTCGTCTAAGGAACCAAGAAGCTGTTGTTAATTTTAGCATTGTACTTAACAAAGCCATGGCTGGTTTGGAAACAGAGAAGGTTCCCTTTGGTTTCTATACTCGTGAGGGGAAGTATGTAGAATGTCTTCTTTCTGTGAGTAAGAAATTGGATGCAGAGGGCGTAGTTACTGGGGTATTCTGCTTCTTGCAATTAGCTAGTCCAGAACTGCAACAGGCGTTACACATTCAGCACCTATCTGAACAAACTGCATTGAAGAGACTGAAAGATTTAACTTATTTGAAGAGGCAAATCCGGAATCCTCTATATGGGATTATATTCACCCGAAAATTGTTAGAGGGTACTGAGTTGGGAGCTGAACAAAATCAATTTCTGCAAACGGGCACTAGGTGTCAACACCAGCTCAGTAAAATTCTGGATGACTCAGATCTTGACAGCATCATTGATGGTTACCTGGATTTGGAGATGGTTGAATTTACTATGCATGAAGTTTTGGTTGCCTCCCTAAGTCAAGTGATGACAAAGAGTAATGCAAAGGGTATCCCTGTAGTCAACCATGTTGAAGATCATATTACAACAGAAACCTTATATGGTGATAGTCTCAGGCTTCAGCAGGTCTTAGCTGACTTTTTATCGATTTCCATCGATTTCACACCAAGCGGAGGTCAGGTTGTTGTAGCAGCCTCATTAACCAAACAGCAGTTAGGGAAACTAGTCCATCTCGCTTATTTGGAACTCAGCATAACACATGATGGTTTTGGGGTTCCAGAAACATTGCTGAACCAGATGTTTGGACGTGATGGAAATGAATCTGAAGAGGGTATTAGCATGCTGATTAGCAGAAAACTGCTAAAGCTGATGAATGGAGACGTACGTTATATAAGAGAAGCGGGAAAATCATCTTTCATCTTAACTGTTGAACTTGCCGTAGCCCATAATTCCAGGGCTTGA 3393 0.4309 MSSSRPSQSSSNNSGRSSRHSARVIAQTTLDAKLHATFEESGSSFDYSNSVRLSPGTGTASGDNQPRSDKVTTAYLHQIQKSKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSAAAIQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSVIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSLETLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVIAEVKRPGLEPYLGLHYPATDIPQVTRFLFMKNKVRMIVDCRAKHVKVLQDKKIPFDLTLCGSTLRAAHSCHLQYMENMKSSASLVMAVVVNDNDEDGDSGSDAVQPQKRKRLWGLVVCHHTTPRFVPFPLRYACEFLAQVFAIHVNKELEIEYQIVEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIREIALWLSEFHRDSTGLSTDSLSDAGFPGAAALGDIACGMAAVRIASKDIVFWFRSRTAAEIRWGGAKHEPGEKDDGRRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKETESMEISTYAINTRLGDLKIEGMQELEAVTSEMVRLIETATVPILAVDVNGMVNGWNTKIAELTGLPVEKAIGKHLLMLVEDFSVDRVKKMLDMALQGEEEKNVQFEIKTHDLKIDSGPISLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMIKLTGWKREEVMDKMLLGEVFGTQIASCRLRNQEAVVNFSIVLNKAMAGLETEKVPFGFYTREGKYVECLLSVSKKLDAEGVVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKDLTYLKRQIRNPLYGIIFTRKLLEGTELGAEQNQFLQTGTRCQHQLSKILDDSDLDSIIDGYLDLEMVEFTMHEVLVASLSQVMTKSNAKGIPVVNHVEDHITTETLYGDSLRLQQVLADFLSISIDFTPSGGQVVVAASLTKQQLGKLVHLAYLELSITHDGFGVPETLLNQMFGRDGNESEEGISMLISRKLLKLMNGDVRYIREAGKSSFILTVELAVAHNSRA 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02693 1130 Gene3D PAS domain 617 754 - -
Cca03g02693 1130 Gene3D PAS domain 769 881 - -
Cca03g02693 1130 SMART HisKA_10 901 965 IPR003661 GO:0000155|GO:0007165
Cca03g02693 1130 PRINTS Phytochrome signature 138 160 IPR001294 GO:0006355|GO:0009584
Cca03g02693 1130 PRINTS Phytochrome signature 238 257 IPR001294 GO:0006355|GO:0009584
Cca03g02693 1130 PRINTS Phytochrome signature 323 344 IPR001294 GO:0006355|GO:0009584
Cca03g02693 1130 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Cca03g02693 1130 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Cca03g02693 1130 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Cca03g02693 1130 PRINTS Phytochrome signature 626 642 IPR001294 GO:0006355|GO:0009584
Cca03g02693 1130 PRINTS Phytochrome signature 645 660 IPR001294 GO:0006355|GO:0009584
Cca03g02693 1130 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Cca03g02693 1130 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Cca03g02693 1130 Pfam PAS fold 74 190 IPR013654 GO:0006355
Cca03g02693 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 876 IPR035965 -
Cca03g02693 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 397 IPR016132 -
Cca03g02693 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 79 192 IPR035965 -
Cca03g02693 1130 SMART pas_2 625 691 IPR000014 -
Cca03g02693 1130 SMART pas_2 755 824 IPR000014 -
Cca03g02693 1130 ProSiteProfiles Histidine kinase domain profile. 907 1126 IPR005467 -
Cca03g02693 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 962 1119 IPR036890 -
Cca03g02693 1130 Gene3D PAS domain 78 326 - -
Cca03g02693 1130 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Cca03g02693 1130 SUPERFAMILY GAF domain-like 203 404 - -
Cca03g02693 1130 Coils Coil 404 424 - -
Cca03g02693 1130 SMART HKATPase_4 1012 1124 IPR003594 -
Cca03g02693 1130 Pfam GAF domain 223 407 IPR003018 GO:0005515
Cca03g02693 1130 CDD PAS 767 878 IPR000014 -
Cca03g02693 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1012 1122 IPR003594 -
Cca03g02693 1130 TIGRFAM sensory_box: PAS domain S-box protein 630 746 IPR000014 -
Cca03g02693 1130 Pfam Phytochrome region 420 595 IPR013515 GO:0006355|GO:0009584
Cca03g02693 1130 MobiDBLite consensus disorder prediction 1 25 - -
Cca03g02693 1130 MobiDBLite consensus disorder prediction 43 68 - -
Cca03g02693 1130 SUPERFAMILY GAF domain-like 415 594 - -
Cca03g02693 1130 Gene3D - 412 585 IPR043150 -
Cca03g02693 1130 CDD PAS 634 740 IPR000014 -
Cca03g02693 1130 Pfam PAS fold 626 740 IPR013767 GO:0006355
Cca03g02693 1130 Pfam PAS fold 756 878 IPR013767 GO:0006355
Cca03g02693 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1125 - -
Cca03g02693 1130 PIRSF Phytochrome_conventional 1 1130 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cca03g02693 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 629 736 IPR035965 -
Cca03g02693 1130 Gene3D - 204 568 IPR029016 -
Cca03g02693 1130 ProSiteProfiles PAS repeat profile. 623 693 IPR000014 -
Cca03g02693 1130 SMART gaf_1 223 417 IPR003018 GO:0005515
Cca03g02693 1130 Gene3D - 963 1129 IPR036890 -
Cca03g02693 1130 PANTHER PHYTOCHROME A 1 1125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02693 Cca-Chr3 48221507 48228329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02693 1 1126 Histidine Kinase Gene Family AT1G09570 77.087 0.0 1816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02693 K12120 - gmx:100791098 1973.36