Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02690 ATGGCGAGAGTTTTGTGGGTTGGCATTGCTATAGGACTTGTTTTTTGCAACTGGGTTGATGGCTTGGTAGGATATGAAGATCACTTCAATGAAACAGAGTTGTCTCTGTTAGAGGCTCGTGAAGCTTCCTTGTCCTACACTGGGGGGAATCTTCTGCTGGTAGGACTCACCCTAATTCAAAATGCTGCAGCTAAAGGAGCAGTCTGCTTGGATGGAACATTACCTGGTTATCATTTGCATCGAGGATATGGATCAGGATCAAATTGCTGGCTTATTAATTTAGAGGGGGGTGGATGGTGTAATAATGTTAGAACATGTGTTTATCGCAAGAAAACCCGGCGTGGGTCATCAGATTTCATGGAAAAGGAGATACCTTTTACGGGAATATTAAGTAATAAGGCTGAAGAAAATCCAGATTTTTTCAATTGGAATAGAGTAAAGCTTCGTTACTGTGATGGTGCCTCATTTGCTGGGGATGGTCAAGATGAGCCTGCAGAACTGCAATTCAGAGGGCAGCGTATTTGGGCAGCTGCAATGGAAGATTTGATGTCAAAAGGAATGCGTTTTGCCAATCAGGCTCTTCTTTCGGGATGCTCTGCGGGTGGCCTAGCTACTATTATTCATTGCGATGAATTCCGTGGTCTCTTTCCAAGGACCACCAAAGTGAAATGTCTCAGTGATGCTGGGTTGTTTCTTGATTCGATTGATGTATCTGGTGGGCGCACCCTCAGGAATTTATACAGTGGTGTCGTAGGATTGCAGGGAGCACAGAAGAATCTGCCACAAATTTGTACTAATCAGCTTGATCCCATCTCGTGCTTCTTTCCTCAAAATTTGATTGCCAGTGTTAGGACCCCGCTTTTCATTCTTAATGCTGCTTATGATTCATGGCAGATCCAGTCTAGTTTAGCTCCTCCATCTGCTGATCCCCATGGCTATTGGCATGAGTGTAGATTAAACCATGCTAAATGTACTGGACCACAAATTCAATTTCTGCAAGGGTTCAGGAATCACATGCTGCATGCTATTATAAACTTCTCAAAATCAAGCCGGAATGGCTTGTTTATTAATTCATGTTTTTCTCACTGCCAAACTGAGAGACAGGATACATGGTTTGCTGACAATTCTCCTGTTATTAGGAACAAGACAATTGCTCTAGCTGTTGGAGACTGGTATTTCGATCGAGCAGGTGTTAAGGTCATTGATTGTCCATACCCTTGTGATAATACGTGCCATCATCTGATTTTCAGATGA 1254 0.4306 MARVLWVGIAIGLVFCNWVDGLVGYEDHFNETELSLLEAREASLSYTGGNLLLVGLTLIQNAAAKGAVCLDGTLPGYHLHRGYGSGSNCWLINLEGGGWCNNVRTCVYRKKTRRGSSDFMEKEIPFTGILSNKAEENPDFFNWNRVKLRYCDGASFAGDGQDEPAELQFRGQRIWAAAMEDLMSKGMRFANQALLSGCSAGGLATIIHCDEFRGLFPRTTKVKCLSDAGLFLDSIDVSGGRTLRNLYSGVVGLQGAQKNLPQICTNQLDPISCFFPQNLIASVRTPLFILNAAYDSWQIQSSLAPPSADPHGYWHECRLNHAKCTGPQIQFLQGFRNHMLHAIINFSKSSRNGLFINSCFSHCQTERQDTWFADNSPVIRNKTIALAVGDWYFDRAGVKVIDCPYPCDNTCHHLIFR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02690 417 Pfam Pectinacetylesterase 53 396 IPR004963 GO:0016787
Cca03g02690 417 PANTHER PECTIN ACETYLESTERASE 3 416 - -
Cca03g02690 417 PANTHER NOTUM-RELATED 3 416 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02690 Cca-Chr3 48185652 48190189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02690 1 417 Carbohydrate Esterase AT1G57590 65.721 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02690 K19882 - gmx:100782401 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02690 03 48185652 48190189 Cca03g02708 03 48391194 48395333 ECH
Cca03g02690 03 48185652 48190189 Cca02g01367 02 32129817 32134841 ECH
Cca03g02690 03 48185652 48190189 Cca03g02690 03 48185652 48190189 ECH
Cca03g02690 03 48185652 48190189 Cca02g01367 02 32129817 32134841 PCT