Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02688 ATGAACAACAACACATGTGGTACAGTTGATCaatcttccacACTCAACAATGATTTGTTTGAGCTGGTTTGGGAAAAGGGTCAGATTTCAGTGCAGGGTCAGTCCAGCAGAGCTAGAAAGAACCCAAATTGTAAAAGTTTTCCATCTCACAGTCCAAGGAGGGAAGTAGGATATATTAATGCTAATGCTAATAATGTTACCAATACAAGGATAGGGAAGTATGAGAATTTAGGTGGTGAATTGGATGTAAGTGAAAAAGAGGAAGACATGGTGATGCCTTGGTGGAATTATGGAGTGGATGACTCTTTGCAACATGGATATAATTCTGATTTATTCCATCAACTATCTGGGGTCACCATGAATGGCCTCTCATCCTCAGATAATTTTTCTTTGCTAGATAGAAGAAATAATTGTAACAAGGTATCTAGGGACACTCATAAACACTCTTCATTTGCATCTGTATCCAGGGTAGAAAATATAGCTGAAAACAACACAAAAGGGGAAGACACTCAGATTCCATCTTTCTCAAGTGGTTTTTCCAGCTTAAAGATGGAGAGGCAAGGTTTAACTATGTGTAGCAATAGTTCCACCGTGATGAATTTTTCCCATTTTGCAAAACCCGCTGCTATGGTCAGAGCGAACCTTGAGTACTTGACATCAAGATCAGCAAGTGTTGGAATAAAGAATAGAGGTGCTGCTGCAACTGCAACCAATCCAGATGAACCAAAGAAATTAGGCACACATAGTTATCGTCATCAAGTTATAGAGCCAAAATCTGTTGAACATGATGGTGTTGTTTCTACAAAGTGTGACCCTTCTTGGAAAGATATATCCAAGATTGGTCAAACTTCAAACCTAGTTGTTGGTGAAAGTGAGAATAAAGGAGAAGAAGCTGCTGCAAAAAATGTGGAGCCAACTATAGTCTCTTCCTCTGTTTGTTCTGGCAATGGTGCAGAGAGGGGTTCGGGTGACCCAAATCAAAATTTGAAGCAAAAAAGTAGAGACACTGAGGACTTTGAGTGGCAAAGTGAAGATTTAGAGGAAGAATCAGTTGGTGTTAAAAAGGATGTTCCTGCACCACGTGTTGGCTCCAAGAGAAACCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATTAATGAAAAGATGCGTACGTTACAAGAACTCATACCAAATTGCAATAAGGCGGATAAAGCTTCAATGTTGGACGACGCGATCGAGTATCTTACAACACTTCAACTACAACTTCAAATAATGTCAATGGGAAGTGGTTTATGCATGCCTGCAATGATGTTACCTCCGGGAATGCAACACATGTATGGTTCACCACATATGAGCCCTTATTCAGGAATAGGTGTTGGCATGCAAATGAGGTTAGGAATGGGCATGCATGATGGTAACGATGAGTGTTATAGATTTCCAATGATTCAAGGAAATCAACATACACAAGTGTTTGGGCTCCCCATGCCAATGCCACATGCTCCCATCTTTTCCTTTTCAGCAGATCAACCTTTTATGAGCCCATCAACTTTAGGGTTAAATGCATGTGAAACTATGGATCCAATGCCTCAACATGTACAAAACAACAACGCTTGTTCAACGAATCAGGTGTTGCTATAA 1635 0.4012 MNNNTCGTVDQSSTLNNDLFELVWEKGQISVQGQSSRARKNPNCKSFPSHSPRREVGYINANANNVTNTRIGKYENLGGELDVSEKEEDMVMPWWNYGVDDSLQHGYNSDLFHQLSGVTMNGLSSSDNFSLLDRRNNCNKVSRDTHKHSSFASVSRVENIAENNTKGEDTQIPSFSSGFSSLKMERQGLTMCSNSSTVMNFSHFAKPAAMVRANLEYLTSRSASVGIKNRGAAATATNPDEPKKLGTHSYRHQVIEPKSVEHDGVVSTKCDPSWKDISKIGQTSNLVVGESENKGEEAAAKNVEPTIVSSSVCSGNGAERGSGDPNQNLKQKSRDTEDFEWQSEDLEEESVGVKKDVPAPRVGSKRNRSAEVHNLSERRRRDRINEKMRTLQELIPNCNKADKASMLDDAIEYLTTLQLQLQIMSMGSGLCMPAMMLPPGMQHMYGSPHMSPYSGIGVGMQMRLGMGMHDGNDECYRFPMIQGNQHTQVFGLPMPMPHAPIFSFSADQPFMSPSTLGLNACETMDPMPQHVQNNNACSTNQVLL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02688 544 MobiDBLite consensus disorder prediction 310 329 - -
Cca03g02688 544 PANTHER TRANSCRIPTION FACTOR PIF3 7 539 IPR044273 GO:0003700|GO:0006355
Cca03g02688 544 MobiDBLite consensus disorder prediction 32 48 - -
Cca03g02688 544 MobiDBLite consensus disorder prediction 32 53 - -
Cca03g02688 544 Gene3D - 363 425 IPR036638 GO:0046983
Cca03g02688 544 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 368 417 IPR011598 GO:0046983
Cca03g02688 544 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 428 IPR036638 GO:0046983
Cca03g02688 544 CDD bHLH_AtPIF_like 368 430 - -
Cca03g02688 544 Coils Coil 329 349 - -
Cca03g02688 544 MobiDBLite consensus disorder prediction 310 382 - -
Cca03g02688 544 Pfam Helix-loop-helix DNA-binding domain 372 418 IPR011598 GO:0046983
Cca03g02688 544 SMART finulus 374 423 IPR011598 GO:0046983
Cca03g02688 544 MobiDBLite consensus disorder prediction 347 382 - -
Cca03g02688 544 PANTHER TRANSCRIPTION FACTOR PIF3 7 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02688 Cca-Chr3 48159684 48163182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02688 17 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.415 5.92e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g02688 HLH 5.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02688 K12126 - gmx:102659557 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02688 03 48159684 48163182 Cca03g02688 03 48159684 48163182 ECH