Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02684 ATGGACTATCGATGGACCAATGGTAGGCAGGAAACCGGTGGCCGTGACAGGAGGCAATCTAAGAGGGAACAGGCATATGAGGAATCTCTCATTGAGGATTTGGCAGAGGATTTTCGTTTGCCAATTAACCACAGGCCGACAGAAAATGTTGATCTGGACAATGTAGAGCAAGCATCTCTGGACACACAGTTAACATCATCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAAGGAAAAGGTCTTGGGAAGGATGAACAAGGAATCATTGAGCCAATAAAATCTGGGATTAGAGATCCTAGACTGGGGGTTGGGAAGCAAGAAGAAGATGATTTCTTTACTGCAGAAGAAAATATCCAGCGGAAAAAACTTGATGTTGAATTGGAGGAGACAGAAGAACATATGAAGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAGCTGGCAATGGAGTTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGTAGTAGTCGGGACGATAGGCAAAAGCGAGAACAACAGCGTCAAGAGAGAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGACTTCAACTGCAAGAAGAGTCTGGATCAGCAACAGTTTCCTCTGAATCTAGAACTGCTACAGCACTCACAGATCAGGTGCAGCGAAATACTTTGAAGTTTGGGTTTTCTTCTAAAGGCAGTGGCTCCAAGATTACAATTGGTGTCAAGAAGCAAAATGTTGCAAAGAAGCAAAATGTTCCAATCTCCTCTATATTTAGTAATGATAGTGATGATGAATAA 915 0.4164 MDYRWTNGRQETGGRDRRQSKREQAYEESLIEDLAEDFRLPINHRPTENVDLDNVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHMKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEREMAKFAQIADAQKQQRLQLQEESGSATVSSESRTATALTDQVQRNTLKFGFSSKGSGSKITIGVKKQNVAKKQNVPISSIFSNDSDDE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02684 304 MobiDBLite consensus disorder prediction 9 27 - -
Cca03g02684 304 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Cca03g02684 304 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 304 - -
Cca03g02684 304 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Cca03g02684 304 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Cca03g02684 304 MobiDBLite consensus disorder prediction 227 255 - -
Cca03g02684 304 MobiDBLite consensus disorder prediction 192 222 - -
Cca03g02684 304 SUPERFAMILY beta-beta-alpha zinc fingers 149 189 IPR036236 -
Cca03g02684 304 SMART G-patch_5 64 109 IPR000467 GO:0003676
Cca03g02684 304 MobiDBLite consensus disorder prediction 192 255 - -
Cca03g02684 304 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g02684 304 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02684 Cca-Chr3 48117489 48121260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02684 1 304 C2H2 Transcription Factor Family AT5G26610 63.844 1.50e-124 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02684 - - gmx:100793206 528.48