Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02681 ATGGCCCCAAACAAGATGCAAACAAATGTGAAGTCTCTTCTATATGTTTGCCAAAAACCAGAGGAACCAGAAACTTGTATCCGTGTGTTGAAAAACGTAGGTGAGAGGGACACAATTTTGGATTACGAGAAAGGAGTTATCAATGCAACCCTCACAGAGTTGTTGGTGGTGTTTAGGCCTAAGCCTCGTCTTCAAAGAAGCCTCACGCCACTGCAACATCAGTCATATATAGATTGTTTGGAACTCTTAATTTTCAGAAAAGAAGAACTAGAATCTTTGTATATGAATAGTGAAAATGCAAATGCTAATGTTGAGTTGAACAGGCTAAGCCTGGATGATGTAATCAACAACCTAATTCCAATTCTTATTGCAAGGATAGCCTTAGCCATTGTTAATAATTTCTATGAGAGGCCTCCTAACATTAAGGCTCAACGACTAGATGGATTTCCAAGATGGTTCCCTACAACAAAGTGCCAAATGATAGAAGCTAAAGGAGGCAGTGGTCAACAATGGCCAAAAGATGTAATTGTGGTCGGTAAAGATGATGAGAGAGTGGTGATTCCTAAGGATGTAAACAAAGTGTTCATGTATGGTGATGGGAGTGAGAATACCATTGTCCCATGTATCAACACAAGAGACCCCAAAATAGTCACAAGCACCTTTCAGGCAGCCACGTTTGTGGCAATGGGAAAAGGATTCATTTGCAAAGACATGGGTTTCATTGCCCCAGTTGACATTACAGGAGCACCAGCCCTCCTTGTTCTTTTTGATCATGCAACATTCTTCAACTGTAGAATTAATGGTGATGAAAATAGTTTATATGCAGTAACCCAACGCCAATTCTACCGAGACTGTGAGATTCTTGGTAGTGTGGACATCATTAAGGGAGACTCTACAACCGTAACTCAGAACTCACAAATCATTGTGAAGGCTTGA 936 0.406 MAPNKMQTNVKSLLYVCQKPEEPETCIRVLKNVGERDTILDYEKGVINATLTELLVVFRPKPRLQRSLTPLQHQSYIDCLELLIFRKEELESLYMNSENANANVELNRLSLDDVINNLIPILIARIALAIVNNFYERPPNIKAQRLDGFPRWFPTTKCQMIEAKGGSGQQWPKDVIVVGKDDERVVIPKDVNKVFMYGDGSENTIVPCINTRDPKIVTSTFQAATFVAMGKGFICKDMGFIAPVDITGAPALLVLFDHATFFNCRINGDENSLYAVTQRQFYRDCEILGSVDIIKGDSTTVTQNSQIIVKA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02681 311 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 4 119 - -
Cca03g02681 311 SUPERFAMILY Pectin lyase-like 171 309 IPR011050 -
Cca03g02681 311 Coils Coil 87 107 - -
Cca03g02681 311 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 178 310 - -
Cca03g02681 311 Gene3D - 171 311 IPR012334 -
Cca03g02681 311 PANTHER PECTINESTERASE 4 119 - -
Cca03g02681 311 PANTHER PECTINESTERASE 178 310 - -
Cca03g02681 311 Pfam Pectinesterase 178 310 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02681 Cca-Chr3 48097771 48100552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02681 182 310 Carbohydrate Esterase AT4G33230 44.275 4.59e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02681 K01051 - gmx:102665007 352.443