Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02680 ATGGGCGGAGACGGAGCCACGGCCAACGCGGAGGCGCAGTACACCACCGCCAAGACCTCCGTCTGGTGGGACATCGAGAACTGCCACGTCCCAAAGGGTTCTGATCCCCACGCCATCGCGCAGAACATCAGTTCCGCCCTCGTTCGCATGAACTACTGCGGCCCCGTCTCCGTCTCCGCCTACGGCGACACCACGCGCATCCCAGCGTCTGTACAGCACGCGCTCTCCAGCACCGGAATCTCCCTCAACCACGTCCCCGCCGGCGTGAAAGATGCAAGTGATAAGAAGATTCTTGTAGATATGCTGTTCTGGGCAGTGGACAATCCTGCACCTGCTAATTATTTATTAATTTCCGGTGACCGAGACTTTTCGAATGCGCTCCATCAACTTCGGATGAGGAGATATAATATTCTTCTTGCGCAACCTCAGAAAGCATCTGCACCCCTAGTTGCTGCTGCCAAGAGTGTATGGCTTTGGACTACCCTCTTAGCTGGAGGACCTCCTCTGTCTAATGGTGAATCGCAACAACTTGGTAATGGTAACCTTAGCCATGTATCATCTTCTGACTCCTTACAAATACCAGTTACAAGTGCTGTTCTGATACAGCAACAGGTGGATTCCTATTCAGAAGTTCATGTAGGAAATTCAAAATCAAATGGAGGAAGGGGGGTTGATTCGAGATATCAGGGGAAAACAAATTGGAGAAACCCGGGTCAAACAAATGGACCCAGATCCATGAATCCACCACCAGTTGGACCTCAAGATAATCGCAATCGTAATAATATAAACTCTTATCGACCTGGTAACTTTAATCCTAATGTTCCGCATAGTGGATCTGCTACAAATTATGTTCATGGAAATACTACTGATCAGTTATGGAGCAATAACAGTAATCTACAGGGCGGCAATCATCAAATTCCTTATTCACAGCCATTAAGACCAAACAACTTCCCATTGCAACCTCCTTTTGCACCTAGTAATTCTTATACTCCAAATTCCCATACATTTGCAACTTCAATGATGCCACCTAGAACTGGTGGTCCCAATTTCACTACAGGGCCACATACCAATGTGCCAGATATTGGTAATCTGAACATTTCTGGATATCCTAATACTGCTCATAACCCTCCTATTGTTCCACAACGGAGTGGAGAGTTGAAACACAATCCTAGTAGTAATGCACCTCATCTTTTAAGATCAATTGATGAAAAAAATGGACATATGGTACATAACAGTGGCACACAACAATTACACCAAGGTTATCAGCATGGCCCAGATTATCAACATACACCATTAGCAGCAATGGGTAATAATAACTCTCCTGGTAATGGCATGTGGGGTTCTCCAGGATGTCCTAAACCTTCTGAATATGTACAAGGCCTAATAGGGGTTGTTTTACTTGCCTTGAACTCGCTAAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGGTATGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTCTTGAGAGTGCTATTGAGCAGCAGATGGTGGTGAAACAGAATTTAGGAGCTTTGCCACTTTATGTTGGTAAGAATGATAAACTTTGGAAGTGTGTAAATCCTTTAGGTGGTAATCCTAAGCAGCACTCAAAAGAAACATGGGAAGAAATTGAAAAGTTTTTAACAACTCCTGCTGGAAGATCAGCATTAATGGCTACACAGTGCAAGTATGAAGCAGGTATTGTTATAAAGAATATGTGCTTTAAAGATCTTGCTTTGGGTGATGTCCTTCAAATTTTAAACATGTTAGTTACCCATAAAAAATGGATTGTGCATCATCAGTCTGGTTGGCAACCACTTAACATTACACTTCCTGAGACAAACCCTGGTTCAGGGGTTGTAGCTGGCGCATAA 1902 0.4432 MGGDGATANAEAQYTTAKTSVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSVSAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTTLLAGGPPLSNGESQQLGNGNLSHVSSSDSLQIPVTSAVLIQQQVDSYSEVHVGNSKSNGGRGVDSRYQGKTNWRNPGQTNGPRSMNPPPVGPQDNRNRNNINSYRPGNFNPNVPHSGSATNYVHGNTTDQLWSNNSNLQGGNHQIPYSQPLRPNNFPLQPPFAPSNSYTPNSHTFATSMMPPRTGGPNFTTGPHTNVPDIGNLNISGYPNTAHNPPIVPQRSGELKHNPSSNAPHLLRSIDEKNGHMVHNSGTQQLHQGYQHGPDYQHTPLAAMGNNNSPGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRYGDPKHRNTDVKKALESAIEQQMVVKQNLGALPLYVGKNDKLWKCVNPLGGNPKQHSKETWEEIEKFLTTPAGRSALMATQCKYEAGIVIKNMCFKDLALGDVLQILNMLVTHKKWIVHHQSGWQPLNITLPETNPGSGVVAGA 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02680 633 CDD PIN_limkain_b1_N_like 18 142 - -
Cca03g02680 633 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 2 618 - -
Cca03g02680 633 MobiDBLite consensus disorder prediction 212 242 - -
Cca03g02680 633 PANTHER LIMKAIN B LKAP 2 618 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cca03g02680 633 Pfam NYN domain 18 154 IPR021139 GO:0004540
Cca03g02680 633 Gene3D - 9 161 - -
Cca03g02680 633 Pfam OST-HTH Associated domain 570 619 IPR025677 -
Cca03g02680 633 MobiDBLite consensus disorder prediction 251 313 - -
Cca03g02680 633 MobiDBLite consensus disorder prediction 212 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02680 Cca-Chr3 48090591 48095057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02680 8 197 C2H2 Transcription Factor Family AT5G61190 70.526 2.38e-85 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02680 - - gmx:100794608 1216.83