Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02677 ATGGGGTCTAATCTTAATGCTGAATTGTCCAAGAAAACTCCCTTTTTTGGTCTTAAGGTTTGGGAAATAATTGGAATTGCGGTTGGATTGTCTATAATAGTTATTCTCTCTGTGCTCTCACTTTGCCTCACGTCAAGGAAGAAATCTAGAAAAGATAAAGACAGGATTCCCCTTAGTCAAATACCTGCTGTCTCAAAGGAAATCAAGGAAGTGCGGGTTGAACAAGTGTCAACCAATGTATTTGCTCCTCGTGATGGAATACTTCTCACAATTCATGATAAGTCCAGTGACAAGGAATCAGACAAAGTCATGGTTCATTTAGGTGTGGGGAAGATGAAGAATGGGGATAGCACTAGTTACTCGGATTCATTTCATCACATAGAGAAAGATGGAGGTGGTTCATACACACATTCAGGAGAAGAAGGTAGCTCTGGCACTGGCACGGTTACAGTGTACAAGCAATCTTCTTCATACCCTATAACAGCTCCTTCACCTCTATCTGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCCACAAACCGTTTTTCCAAAGAAAATGTCCTTGGTGAAGGTGGGTATGGAGTTGTTTATAGGGGACAGTTGATCAATGGAACTCAAGTGGCAGTTAAAAAGATACTCAATAACATTGGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCCGCCACAAAAACTTGGTTCGCCTTTTGGGGTACTGCATGGAGGGAACTCACAGGATGTTAGTTTATGAGTATGTCAATAATGGAAACTTAGAACAGTGGCTTCATGGAGCTATGCGTCACCATGGATACCTTACCTGGGAAGCACGAATCAAGATTCTCCTTGGCACAGCCAAAGCGCTTGCATATTTGCATGAAGCAATTGAGCCAAAGGTGGTACACCGAGATATCAAGTCAAGCAACATATTAATTGACGATGATTTCAATGCTAAGGTTTCTGATTTTGGCCTGGCCAAGTTATTGGGTGCTGGGAAGAGTTATGTCACAACACGAGTTATGGGAACTTTTGGATACGTGGCTCCTGAATATGCAAATACTGGACTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGGATTACTGGAAGAGATCCAGTTGACTATGGTCGACCAGCAAATGAAGTGAACCTGGTTGATTGGCTGAAGATGATGGTGGGAAACAGGAGATCAGAAGAAGTGGTGGACCCCAACATTGAGATGAAGCCATCCACCAGAGCTTTAAAACGGGCTCTCTTAACTGCTTTAAGATGTGTTGATCCAGATTCTGAGAAAAGGCCCAAGATGGGCCAAGTTGTACGTATGCTGGAGTCAGAGGAATACCCTTTACCAAGAGAGGACCGAAGACACCGAAGAAGAAATCGAGGGGGTAGTGGAGAAATAGAGTCCCAGAAGGAATATTCTGACACAGACAGGAGTGAGATTCATGATTCCAGAGAAGAAAGAAGAGGGTGA 1539 0.4308 MGSNLNAELSKKTPFFGLKVWEIIGIAVGLSIIVILSVLSLCLTSRKKSRKDKDRIPLSQIPAVSKEIKEVRVEQVSTNVFAPRDGILLTIHDKSSDKESDKVMVHLGVGKMKNGDSTSYSDSFHHIEKDGGGSYTHSGEEGSSGTGTVTVYKQSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGQLINGTQVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCMEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSYVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPANEVNLVDWLKMMVGNRRSEEVVDPNIEMKPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPLPREDRRHRRRNRGGSGEIESQKEYSDTDRSEIHDSREERRG 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02677 512 Gene3D Phosphorylase Kinase; domain 1 175 268 - -
Cca03g02677 512 SMART serkin_6 193 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02677 512 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 510 - -
Cca03g02677 512 MobiDBLite consensus disorder prediction 130 150 - -
Cca03g02677 512 PANTHER OS01G0323000 PROTEIN 3 510 - -
Cca03g02677 512 Gene3D Transferase(Phosphotransferase) domain 1 269 479 - -
Cca03g02677 512 SUPERFAMILY Protein kinase-like (PK-like) 177 472 IPR011009 -
Cca03g02677 512 CDD STKc_IRAK 199 465 - -
Cca03g02677 512 ProSitePatterns Protein kinases ATP-binding region signature. 199 222 IPR017441 GO:0005524
Cca03g02677 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Cca03g02677 512 Pfam Protein kinase domain 194 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02677 512 MobiDBLite consensus disorder prediction 450 512 - -
Cca03g02677 512 ProSiteProfiles Protein kinase domain profile. 193 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02677 Cca-Chr3 48061650 48067120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02677 17 467 Trihelix Transcription Factor Family AT1G70460 39.301 2.33e-91 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca03g02677 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02677 - - gmx:100787014 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02677 03 48061650 48067120 Cca05g01410 05 32532123 32542622 PCT
Cca02g01385 02 32350055 32355621 Cca03g02677 03 48061650 48067120 PCT