Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02671 ATGGCGTCGGTTGGTGTGGCACCAACATCAGGTTTGAGAGAATCCACTGGTGTTGATAGGTTGCCGGAGGAGATGAATGATATGAGAATTAGGGATGATAAAGAAATCGAAGCCATGGTGGTTGATGGCAACGGAACGGAGGCAGGACATATCATTGTTACTACCATCGGAGGTAGAAATGGTCAACCGAAGCAGACTATAAGTTATATGGCAGAGCGGATTGTTGGGCATGGGTCATTTGGGGTTGTCTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAAGACAAAAGGTATAAAAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTATCTTTGAAGCATTGCTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTGCTTGAGTATGTTCCCGAAACAGTTAATCGCGTGATCAAACATTACAACAAGTTGAACCAACGGATGCCACTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCACTATCTTATATTCATTGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAGTTAATCCACATACCCATCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAgtgttgGTAAAAGGCGAACCAAATATATCATACATATGTTCCAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACGTTTGGTCAGTTGGTTGTGTATTGGCTGAACTTCTGCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATTATCAAGGTTCTGGGAACGCCAACAAGGGAAGAGATCAAGTGCATGAATCCTAACTATACGGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTTCACAAGCGCATGCCTCCAGAAGCAGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCCTTGACCCATGCTTTCTTTGATGAACTTCGTGATCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTCAAATCTCATGAACTGAAGGGAGTCCCGGTTGAGATTTTGCTGAAATTGGTTCCGGTGCATGCGAGGAAGCAGTGTCCATTTCTAGGATTGTGA 1218 0.4228 MASVGVAPTSGLRESTGVDRLPEEMNDMRIRDDKEIEAMVVDGNGTEAGHIIVTTIGGRNGQPKQTISYMAERIVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHCCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHAFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPVEILLKLVPVHARKQCPFLGL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02671 405 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 403 - -
Cca03g02671 405 SUPERFAMILY Protein kinase-like (PK-like) 68 379 IPR011009 -
Cca03g02671 405 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g02671 405 Gene3D Transferase(Phosphotransferase) domain 1 149 396 - -
Cca03g02671 405 ProSitePatterns Protein kinases ATP-binding region signature. 75 99 IPR017441 GO:0005524
Cca03g02671 405 CDD STKc_GSK3 64 356 IPR039192 -
Cca03g02671 405 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02671 405 SMART serkin_6 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02671 405 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 403 - -
Cca03g02671 405 Pfam Protein kinase domain 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02671 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Cca03g02671 405 Gene3D Phosphorylase Kinase; domain 1 53 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02671 Cca-Chr3 48005128 48008998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02671 75 360 MAP Kinase Gene Family AT3G45640 34.237 6.82e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Cca03g02671 Pkinase 2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02671 K00924 - gmx:100795659 807.364