Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02662 ATGGATGACAAACACTCTGTTTCTGCAATTGAGAAGAGAGAGGAGTTTGGGAAGTTGCAGTACGGGTGCGAGCACTATAAGAGACGATGCAAAATTCGAGCACCATGCTGCAATCAGATCTTCCCATGTCGTCACTGCCACAACGACGCCGTGAACTCATCTAGCAACCCTGCGGATCGTCATGAACTTGTTAGACGCGATGTTAAGCAAGTTATATGTTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAGCTGTGGCGTTAACATGGGAGAATATTATTGCGATATTTGCAAATTCTATGATGATGAGACGGATAAAGGACAATTCCACTGTGATGAATGTGGCATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTAAGAAATGTGGCTCTTGCTATTCAGTGAGCTTGCAAAACAATCACTCATGTGTGGAGAACTCAATGAAGAGTTCCTGCCCTGTCTGTTTTGAGTACCTATTTGATTCAATAAAAGGCAGCACCATTTTGAAGTGTGGACACACAATGCATATGGAATGCTGTCAAGAGATGACAACTCAAAATCAGTATCGCTGTCCTATCTGCTTGAAGACAATAGTCAATATGTCTCAGAACTGGGAATATTTAGATCGGGAGATTGAAGCGGTTTCAATGCCAGAGGAGTACAAGTTTGAGGTTTCAATTCTATGCAATGACTGTAACTCTACAAGCACAGTTTCTTTTCACATATTTGGTCACAAGTGCGGACAATGCAGTTCGTATAACACCCGTAGGATTTCGACACCCAGACAACAGTAA 813 0.428 MDDKHSVSAIEKREEFGKLQYGCEHYKRRCKIRAPCCNQIFPCRHCHNDAVNSSSNPADRHELVRRDVKQVICSVCDTEQEVAKVCSSCGVNMGEYYCDICKFYDDETDKGQFHCDECGICRVGGRDKFFHCKKCGSCYSVSLQNNHSCVENSMKSSCPVCFEYLFDSIKGSTILKCGHTMHMECCQEMTTQNQYRCPICLKTIVNMSQNWEYLDREIEAVSMPEEYKFEVSILCNDCNSTSTVSFHIFGHKCGQCSSYNTRRISTPRQQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02662 270 Pfam RING-type zinc-finger 158 198 IPR027370 -
Cca03g02662 270 Gene3D - 231 269 - -
Cca03g02662 270 SUPERFAMILY Zinc hairpin stack 94 151 IPR037275 -
Cca03g02662 270 ProSiteProfiles Zinc finger CTCHY-type profile. 93 157 IPR017921 -
Cca03g02662 270 SUPERFAMILY RING/U-box 157 207 - -
Cca03g02662 270 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Cca03g02662 270 Pfam Zinc-ribbon 205 262 IPR039512 -
Cca03g02662 270 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 14 264 IPR031109 GO:0008270|GO:0016567
Cca03g02662 270 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 264 - -
Cca03g02662 270 SUPERFAMILY CHY zinc finger-like 19 92 IPR037274 GO:0008270
Cca03g02662 270 ProSiteProfiles Zinc finger CHY-type profile. 16 91 IPR008913 GO:0008270
Cca03g02662 270 Pfam CHY zinc finger 23 103 IPR008913 GO:0008270
Cca03g02662 270 SMART ring_2 158 200 IPR001841 -
Cca03g02662 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 230 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02662 Cca-Chr3 47935849 47940152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02662 21 266 C2H2 Transcription Factor Family AT3G18290 43.478 2.74e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02662 K10144 - gmx:100818374 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02662 03 47935849 47940152 Cca03g02662 03 47935849 47940152 ECH