Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02661 ATGAAAATAGAATTTGTAGACATTCTCTTCGCGAGCCAGCGAGAACAAATTGTCAAGCGCCTCAAGGGCTGCTCTCCCGGCTCCAAAAACAAGCCCAAAACGTCGCTCGTTATAACCCGGGAGCCCGAGCCCGCTATGATCCCTTTTGTTTTAGAAATCCTGGGCAGGAGCGACGTGGTTGAGGCCCTGGCCTGGTTCAGTCGCAGAAAGAACACGGGCTTATGCGTCCTGTCCGGTTCGAGAATCGTCGCCAACGTCACTCTTCGTCAACcctctgtcacccctggcgccaccgtcactttccacgaccgctttgatgtcctctccctctccgccacactcttcctccacgcctcgccgacgatcgcactctccgccttcgccgtctcgctcgtcggcccgccgggccagatcatcagcgagaaagaaccaagaagagagggaagaagaaGAAGGAGGGTGGCACAAGAGAGGAAGAAGGGGAAGGTGAAGTTGTTGGAGACAAGACTGAGGGAGTGCAGGCGGTGTAGTACGGAGAGTGGTCTTGCGACTGTTGTAGGGCAGGGGCAAGGGAAGTCGGCAAACCACATTAGTCTCCATCTTGAAGAAAATCGATTCAAAAATCTTGTCTTCATGAGTCTTCTCTACTTATTCAATGCTTGCTGGTTTCTCTTTAGGTTTAAGTTCAACTTTGGTGGTAGTTATTGA 708 0.3715 MKIEFVDILFASQREQIVKRLKGCSPGSKNKPKTSLVITREPEPAMIPFVLEILGRSDVVEALAWFSRRKNTGLCVLSGSRIVANVTLRQPSVTPGATVTFHDRFDVLSLSATLFLHASPTIALSAFAVSLVGPPGQIISEKEPRREGRRRRRVAQERKKGKVKLLETRLRECRRCSTESGLATVVGQGQGKSANHISLHLEENRFKNLVFMSLLYLFNACWFLFRFKFNFGGSY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02661 235 SUPERFAMILY AF0104/ALDC/Ptd012-like 46 139 - -
Cca03g02661 235 ProSiteProfiles PPC domain profile profile. 43 188 IPR005175 -
Cca03g02661 235 Gene3D - 48 140 - -
Cca03g02661 235 CDD DUF296 48 139 IPR005175 -
Cca03g02661 235 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 139 IPR014476 GO:0003680
Cca03g02661 235 Pfam Plants and Prokaryotes Conserved (PCC) domain 48 139 IPR005175 -
Cca03g02661 235 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 16 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02661 Cca-Chr3 47929834 47931094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02661 16 139 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 54.615 1.85e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02661 - - ccaj:109796500 274.248